Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4656 ATGAAACAATTTCATAGGTGGGCTGCCATAGCTTCTCAGTTACCAGGAAGAACAGACAACGAGATCAAGAATTTATGGAACACGCACTTAAAGAAACGTCTCATAAGCAAGGGAATTGATCCACAAACTCATGAACCAGTATCCTCATCACACTACTATCCAATTTCCAAATCAAATTCGTCTATCGCGACACGCCACATGGCTCAATGGGAAAGCGCGAGACTTGAGGCAGAAGCAAGGCTCTCAAAGGACTCACCGTTATTCAATAACAGCAACACTCCTTTAGCAAGCAACAAGTCTGATTCTGACTATTTCCTTAAGATATGGAACTCTGATGTTGGACAATCTTTTCGGGTGGTTCGTAAATCAGACGAAGACGACGACGATGACAAAACTAGGTGCATAAGCTCAATGTCTCAAGAAGGGTCATCTTGTAATAACAACAAATGTGGTTCTGTTTCTGCTGCTGCAACTACTACAGCAACAGATTTGGCTTCATCCACTCCTGCAAGCAATGTGAAGGAAGATTTTGAATGGAGAAACTACAAATTATTTGATCATGTAAGATGTGATGATTCATCAAGCTCTAATGATCTTGAAGACTCTTCTGATACTGCATTGCAGCTTTTGTTGGATTTTCCTTCTAACAATGACATGAGCTTCTTAGAATGA 672 0.4062 MKQFHRWAAIASQLPGRTDNEIKNLWNTHLKKRLISKGIDPQTHEPVSSSHYYPISKSNSSIATRHMAQWESARLEAEARLSKDSPLFNNSNTPLASNKSDSDYFLKIWNSDVGQSFRVVRKSDEDDDDDKTRCISSMSQEGSSCNNNKCGSVSAAATTTATDLASSTPASNVKEDFEWRNYKLFDHVRCDDSSSSNDLEDSSDTALQLLLDFPSNNDMSFLE* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4656 223 ProSiteProfiles Myb-like domain profile. 1 30 IPR001005 -
Psa4g4656 223 SUPERFAMILY Homeodomain-like 5 40 IPR009057 -
Psa4g4656 223 Gene3D - 2 53 - -
Psa4g4656 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 34 IPR017930 -
Psa4g4656 223 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 222 - -
Psa4g4656 223 Pfam Myb-like DNA-binding domain 5 30 IPR001005 -
Psa4g4656 223 PANTHER PROTEIN ODORANT1-LIKE 5 222 - -
Psa4g4656 223 CDD SANT 4 30 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4656 Psa-Chr4 412888399 412891023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4656 6 223 MYB Transcription Factor Family AT3G61250 50.909 3.56e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa4g4656 Myb_DNA-binding 2.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4656 K09422 - gmx:100816569 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4656 4 412888399 412891023 Psa4g4656 4 412888399 412891023 ECH
Psa3g2559 3 215793833 215795409 Psa4g4656 4 412888399 412891023 PCT