Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4646 ATGCAAAGGGCCGAGTTTGAGGCTTCACAATCTCAACTTGACATTGTTGATAAGTTGAACCATGGAATTAAGGAGCAAAAATTAGATCAGGCTTTTGCGAACGATATGCTCGAAGAGATAGCAAGGGCGGTCGGGGTGCCAGTGGAGCCTTCAGAGATCAGCAAAGAGATAGCCAGCATTAGGTGGGAAAAAGAAGAAGCTGCACACAGGAAAGAAAGAGCAGAATTTATATTTTTGGAACATATCATTTTGCTACTCTCTCAAGCTGATACAGCAAGTGATTTCGGAGAAGTTAAGAAGCAATATTTTCAAAGGGTTCAGGTAAAAGAAAGATATGGTTCAAGGGAAAAATGTATTCCGCCACTGAATTATTTCCGTTGTTCGATAACTGAAGCTGTTATGGTAGATCCTGTCAGTCTCTGCACCGGTACTACATGTGAGAGATCTGCCATCGAAGTTTGGTTTGATGATGGCAATATGACTGACCCGAAAACGAATGAGATGCAGGCTCTCATAAAAAAGAATTCGATTAATAAGGATTGGATATCTATAGGAGAACTTATTGATATGATCATCTCCATCCTTGGTAACTCTGATTCTATTGATGTCAAGATGAAAATCTTGATTACTTGGAAGGGTGTTGTTCAGGGGCATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGATGGCGATACATTATTTCCTGCTTACACAATGACTCTAGAGTAATAAAGGAAGCAATTGATTTGCTCTATGAATTGCTTCAAGACCGTTCTGGTTGGAATAAAAGTTTCTGCGAAAAACTTTCTGAGCATCCCAGCACGGTTAATTACCTTGTTACCATTCTAAACGGACCTGTCAGCGATTCAATTGAAACTGCAGAAAAGATTTTGACGGAGCTTTTTGAAACAGACGAGGAAAACATTTGCTTGCTGCTAAGTTTGGTTGGATCGGAGTCTTCAAGAATGTCAATGGCTAAAGCTATAATCAATTTCAATTTGGAAGAATCAAATTTAAAACTCCTTGGCGAGAAAGGAATTATACCTCATTTGCTAGAAATATTATCCGGAAGCATTGAATCGAAAGAATTGTCATTATCAGCATTGGTCAAACTAGCAGGAGTTCATGCCAATAAGGGAATTATTGCTGCATATGGAGGTGTCCCCATTCTTCTATATTTAATGTTCTCCCTTCGGACACGGGCGCTCGTTAGCATTAAATGCTTTGAAATCCTTGAGAAGCTTTCTTCTTCTGATGGAATTGTTGTTTCAAAATCATCATTTGGCCGGTGTTTTCGATCATCACAAGCTCCTCTATGCTCGGCACACGGAAGTGTTTGCAATGTGAATTCCACATTTTGTCTTTTGGAAGAAAATGCACTACCTGGCTTGATTAAGCTGTTACAAGAGGAGGTTCATGCAACTGCTTATGAAGCCATACAGACACTTTCCACATTGGTTATAGAAGACTTTCCTCAGAGAGGAGCTCGTGTTTTGCACGAATCGAATGCAATGAGATCCATATTGAAAATTTTAAACTGGGGAAATGATTCTCTTAAGACAGAAGCTCTTGGACTCTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGAATCCTATGGCTCAATGGCTAGATTGCGTCTATTCCATCTTACTGGCATGAATGTATACGGGGACGGCCACCTAAGGAGAAAAGCTTCCAGGTTGTTAGCTGAGTTTGTTGGCGGAAGGAAAGGAAAGATGTCATCACTGGGAACTTCAAAGGGGATTCTAGAGATCGTCAAGTTTGGGGTTTACGTTACTGTACCCATCACTCTTATGTACGTTTATGCTAGCAATACCGACAACACCCTCCATAAGTTCATCGGAAAAAAGTCATACGTTGAATATCCCAAGGATACACAAAAGCCACCACCACCAGAGGAGCTTAGAGAGATGGCGAGGGAGATAACTCGCAAAAGGAACAACTCCTGA 1977 0.4072 MQRAEFEASQSQLDIVDKLNHGIKEQKLDQAFANDMLEEIARAVGVPVEPSEISKEIASIRWEKEEAAHRKERAEFIFLEHIILLLSQADTASDFGEVKKQYFQRVQVKERYGSREKCIPPLNYFRCSITEAVMVDPVSLCTGTTCERSAIEVWFDDGNMTDPKTNEMQALIKKNSINKDWISIGELIDMIISILGNSDSIDVKMKILITWKGVVQGHARNKEKVVESQGWRYIISCLHNDSRVIKEAIDLLYELLQDRSGWNKSFCEKLSEHPSTVNYLVTILNGPVSDSIETAEKILTELFETDEENICLLLSLVGSESSRMSMAKAIINFNLEESNLKLLGEKGIIPHLLEILSGSIESKELSLSALVKLAGVHANKGIIAAYGGVPILLYLMFSLRTRALVSIKCFEILEKLSSSDGIVVSKSSFGRCFRSSQAPLCSAHGSVCNVNSTFCLLEENALPGLIKLLQEEVHATAYEAIQTLSTLVIEDFPQRGARVLHESNAMRSILKILNWGNDSLKTEALGLLEKVFVSKEMVESYGSMARLRLFHLTGMNVYGDGHLRRKASRLLAEFVGGRKGKMSSLGTSKGILEIVKFGVYVTVPITLMYVYASNTDNTLHKFIGKKSYVEYPKDTQKPPPPEELREMAREITRKRNNS* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4646 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 172 IPR013083 -
Psa4g4646 658 Pfam U-box domain 123 168 IPR003613 GO:0004842|GO:0016567
Psa4g4646 658 ProSiteProfiles U-box domain profile. 120 167 IPR003613 GO:0004842|GO:0016567
Psa4g4646 658 Gene3D - 173 332 IPR011989 -
Psa4g4646 658 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 423 575 - -
Psa4g4646 658 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 166 422 - -
Psa4g4646 658 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 167 - -
Psa4g4646 658 SUPERFAMILY RING/U-box 107 168 - -
Psa4g4646 658 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 423 575 - -
Psa4g4646 658 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 167 - -
Psa4g4646 658 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 166 422 - -
Psa4g4646 658 SUPERFAMILY ARM repeat 174 534 IPR016024 -
Psa4g4646 658 CDD RING-Ubox_PUB 125 167 IPR045210 -
Psa4g4646 658 Pfam Pet100 592 656 IPR018625 GO:0005739|GO:0033617
Psa4g4646 658 SMART arm_5 493 533 IPR000225 GO:0005515
Psa4g4646 658 SMART arm_5 449 489 IPR000225 GO:0005515
Psa4g4646 658 SMART arm_5 218 257 IPR000225 GO:0005515
Psa4g4646 658 SMART arm_5 336 375 IPR000225 GO:0005515
Psa4g4646 658 SMART Ubox_2 124 181 IPR003613 GO:0004842|GO:0016567
Psa4g4646 658 Gene3D - 334 599 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4646 Psa-Chr4 412461499 412465464 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4646 125 397 U-box Gene Family AT1G20780 25.872 2.43e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4646 - - gsj:114377374 568.155