Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4645 ATGCTAGAAGAGATAGCAGGGGCAGTCGGGGTGCCAGTGGAGCCTTCAGAGATCATCAAAGAGATAGCCAACATTAGGTGGGAAAAAGAAGAAGCTGCAAACAGCAAAGAAAGAGCAGAAGTTATATTTTTGGAGCAGATCATTTCGCTACTCTCTCAAGCTGATACAACAAGTGATTTCGAAGAAGTTAAGAAGCAATATTTTCAAAGGGTTCAGGTGATAGAAAGATATGGTTCAAGGGAAAAATATATTCTGCCACTTAATTCTTTCTATTGTTCGATAACTGAAGTTGTTATGGTAGATCCTGTCAGTCTTTGCACCGGTACTACATGTGAGAGATCTACCATCGAAGTTTGGTTTGATGATGGCAATATGACTGACCCGAAAATGAAAGAGGTTCTTGAAGACACTACCTTAAGGTCGAACATTCGGTTAAGAGAATCCATAGTTTGA 453 0.3996 MLEEIAGAVGVPVEPSEIIKEIANIRWEKEEAANSKERAEVIFLEQIISLLSQADTTSDFEEVKKQYFQRVQVIERYGSREKYILPLNSFYCSITEVVMVDPVSLCTGTTCERSTIEVWFDDGNMTDPKMKEVLEDTTLRSNIRLRESIV* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4645 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 150 IPR013083 -
Psa4g4645 150 Pfam U-box domain 89 149 IPR003613 GO:0004842|GO:0016567
Psa4g4645 150 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 149 - -
Psa4g4645 150 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 149 - -
Psa4g4645 150 SMART Ubox_2 89 149 IPR003613 GO:0004842|GO:0016567
Psa4g4645 150 SUPERFAMILY RING/U-box 74 149 - -
Psa4g4645 150 ProSiteProfiles U-box domain profile. 85 150 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4645 Psa-Chr4 412459851 412460303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4645 90 149 U-box Gene Family AT4G36550 43.333 2.06e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4645 - - gmx:100816935 231.106