LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa4g4644	ATGTCAATGGCTAAAGCTATAATCAATTTCAATTTGGAAGAATCAAATTTAAAACTCCTTGGCAAGAAAGGAATTATACCTCCTTTGCTAGAAATGCTATCCGGAAACATTGAATCGACAGAATTGTCATTATCATCATTGGTCAAACTAGCAGGAGTACATGCCAATAAGGGAATTATTGCTGCATATGGAGGTGTCCCCATTCTTCTAGATTTAATGTTCTCCCTTCGGACATGGGCGTTCGTTAGCATTAAATGCTTTGAAATCCTTGAGAAGCTTTCTTCTTCTGATGGAATTGCTCAGTACTTCCGTAAGCCTGCATTGCGCACTCTTCTCGGCATTTGCAAGTTTGAGATAGGTTTAGTTAAGAAGGCGGTTCTGGCAGCGCAAGGTGTATCACTAATTCTTCCCCTTCTTGATGACTCTGGCTCAGAAATCAGGGAAACTGCCATTACTCTTCTCTTTCTTTTCTCCCAACTTGAACCAGAAGGAGTTGTTGAATACCTCTTCAGGCCTAGAAGACTTGAAGCTTTAGTCGGGTTTCTCGAGAATGACGAAAATAATGATGTACAAGTAGCTGCTACTGCAAAGGCAAGAGCAGCAACATTCATTGGTGATCTTTCCATGAGCACTCAAAAGCTCACAGTTGTTTCAAAATCATCATTTTGCCGGTGTTTTCGATCATCACAAGCTCCTCTATGCTCGGCACACGGAAGTGTTTGCAATGTGAATTCCATATTTTGTCTTTTGGAAGCAAATGCACTACCTGGCTTGATTAAGCTGTTACAAGAGGAGGTTCATGCAACTGCTTATGAAGCCATACAGACACTTTCCACATTGGTTATAGAAGACTTTCCTCAGAGAGGAGCTCGTGTTTTGCACGAATCGAATGCAATGAGACCCATATTAAAAATTTTAAACTGGAGAGGTGATTCTCTTAAGGCAGAAGTTCTTGGACTCTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGAATCCTATGGCTCAATGGCTAGATCGCGTCTATTCCATCTTACTGGCATGAATGTATACGGGGACGACCACCTAAGGAGAAAAGTCGCCAGGAAGTCATACGTGATGCTTCTTGTGGGTTGGTTGTGCTTTAGTGGTTATGTACTAAAGTGTCGTTACATAGTCAAGGAAGTTGAACAAGTCATTAGGGATATCGGAAGGGCCGAGTTTGAGGCTTCACAATCTCAGCTTGACATTGTTGATAAGTTGAACCATGGAATTAAGGAGCAAAAATTAGATCAGGCTTTTGCGAACAATATGCTAGAAGAGATAGCAGGGGCAGTCGGGGTGCCAGTGGAGCCTTCAGAGATCATCAAAGAGATAGCCAACATTAGGTGGGAAAAAGAAGAAGCTGCAAATAGCAAAGAAAGAGCAGAAGTTATATTTTTGGAGCAGATCATTTCGCTACTCTCTCAAGCTGATACAGCAAGTGATTTCGAAGAAGTTAAGAAGCAATATTTTCAAAGGGTTCAGGTAATAGAAAGATATGGTTCAAGGGAAAAATATATTCCGCCACTTAATTCTTTCTATTGTTCGATAACTGAAGTTGTTATGGTAGATCCTATCAGTCTTTGCACCGGTACTACATGTGAGAGATCTACCATCGAAGTTTGGTTTCATGATGGCAATATGACTGACCCGAAAATGAAAGAGGTTCTTGAAGATACTACCTTAAGGTCGAACATTCGGTTAAGAGAATCCATAGTTTGA	1743	0.4096	MSMAKAIINFNLEESNLKLLGKKGIIPPLLEMLSGNIESTELSLSSLVKLAGVHANKGIIAAYGGVPILLDLMFSLRTWAFVSIKCFEILEKLSSSDGIAQYFRKPALRTLLGICKFEIGLVKKAVLAAQGVSLILPLLDDSGSEIRETAITLLFLFSQLEPEGVVEYLFRPRRLEALVGFLENDENNDVQVAATAKARAATFIGDLSMSTQKLTVVSKSSFCRCFRSSQAPLCSAHGSVCNVNSIFCLLEANALPGLIKLLQEEVHATAYEAIQTLSTLVIEDFPQRGARVLHESNAMRPILKILNWRGDSLKAEVLGLLEKVFVSKEMVESYGSMARSRLFHLTGMNVYGDDHLRRKVARKSYVMLLVGWLCFSGYVLKCRYIVKEVEQVIRDIGRAEFEASQSQLDIVDKLNHGIKEQKLDQAFANNMLEEIAGAVGVPVEPSEIIKEIANIRWEKEEAANSKERAEVIFLEQIISLLSQADTASDFEEVKKQYFQRVQVIERYGSREKYIPPLNSFYCSITEVVMVDPISLCTGTTCERSTIEVWFHDGNMTDPKMKEVLEDTTLRSNIRLRESIV*	581

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa4g4644	580	Gene3D	-	1	114	IPR011989	-
	Psa4g4644	580	Pfam	U-box domain	519	579	IPR003613	GO:0004842\|GO:0016567
	Psa4g4644	580	ProSiteProfiles	U-box domain profile.	515	580	IPR003613	GO:0004842\|GO:0016567
	Psa4g4644	580	SMART	Ubox_2	519	579	IPR003613	GO:0004842\|GO:0016567
	Psa4g4644	580	SUPERFAMILY	ARM repeat	12	333	IPR016024	-
	Psa4g4644	580	Gene3D	-	122	362	IPR011989	-
	Psa4g4644	580	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	1	100	-	-
	Psa4g4644	580	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	194	362	-	-
	Psa4g4644	580	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	102	195	-	-
	Psa4g4644	580	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	398	579	-	-
	Psa4g4644	580	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	517	580	IPR013083	-
	Psa4g4644	580	SUPERFAMILY	RING/U-box	502	579	-	-
	Psa4g4644	580	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	194	362	-	-
	Psa4g4644	580	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	1	100	-	-
	Psa4g4644	580	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	398	579	-	-
	Psa4g4644	580	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	102	195	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa4g4644	Psa-Chr4	412449375	412452960	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa4g4644	181	335	U-box Gene Family	AT1G76390	25.904	1.44e-09	58.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa4g4644	-		-	gmx:100816935	303.523