Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4640 ATATGCTAGTCAAGTTCCCCCCGGATATGCCACTGTCCAGTTCAACAAGTCTGGGAACCTGCTGCAGACAATCAATTGGAAACACTTGAAGCGGATGAGGATAAATCAGAACCTCAGCTGTCCTTTGCATTCCACTACTCTTGGTCTGACCCGTGTTTGGATTAGGCAATCAATACCCTCACGGACGACAATTGAAGTTCTTGAGATCAATAATTCTGATGATAAATCAGATGTTGATGGCTCTAGTGGAAATGCTACTCCTTTAAGAATTAATCCGGTCTCAGACCCGTTTGTAGCTGATGCTTTGCTAGCTCTGCCAGAGCCGTTGCGCGAGCGAGTAACACCGAAGCCGCTAGCCAAACACTGTGGCAGGAAATCACAGAACACCCAAGCCAATTACCAATATACCAATCACCATAAAGTCGTCTTGCTGCAAATTGTTGCGCCTGCTAGGACAGATGTCTCTGAACATCAAAAGCTTACAAGCCAGGTGCATGAAATTGTTGGACGCATCAATGGAAGATTTGGAACACTTATTGCTGTCCCGATACACCATCTGGATCGGTCACTTGACTTTCATGCATTACGTGCATCCTATGCAGTTACTGATGTAGCACTTGTTGCGTCATTAAGGTGCAACACAATCCCTTGGTGCTGGTGCTATCTCGGTAAATCATCGGAGAAAGAAACAGTACAGATTAGTGATGGTAAGGTTGGTGTTGGGCCTACAAACACAGAAGCTCCTGGCACTGGCAATGGCCATGGCAGAACTCATGTTTCAAATGCCAAGAGCATCAAAGGTCATAGAAAACCTAGTCAAAGTTTTATTGGTGTGATTGAACTGCTGCTTGAATCTATATGCACTTGTGTTCCTCCCTCGAAGGATGACAATACCTCAAACGTACTTCCTGGCACCACAACATTGAGTGACATGTACATTGATGTTTCTATGAATAAAGGAAAAGGCAAAGCAGATGTTTTTGAACAGTTAATGCATGGACAATCAAAACTTGATCCTTCTAGAAATAACTTGTTAGATCAGGTCATGAAAAAACTCAGCACCGCTGCGGAACACCCTCGAGCTTTACATCCATCGCTCTCCTCCGCTGTTAAAGAACTTGTCGAAAATAGCTTAGACGCCGGCGCCACCAGCATCAAAATCTCTCTCAAAGACTTCGGTGAAGAATGGTTTCAGGTCATCGATAGCGGTTGCGGCATTTCCCCAAACAATTGCAAGGTTCTTGCACTGAAGCATCATACTTCAAAATTATCGGAATTTCATGATCTTCAGTCTCTTATTACTTTTAGCTTTAGAGGAGAGGCATCGAGTTCTCTTTGTGCTCTTGGAAACTTGACGGTTGAAACGAAAACCGCGCGGCAAGTTGGAACGACTGTCACAGTTAAAAAGTTGTTCTATAATCTTCTGGTGCGAAGCAAAGAGTTTAAGCGGAACATTCACAAGGAATATGGCAAGTTGGTTTCTCTCTTGAATACATATGCCCTTATTGCAAAAGGTGTTCGATTTGGTTGTACCAACACTACTGGCAAAAATGCAAAGCCTGTGGTACTTAAGACACAAGGAAATGATTCTCTAAAAGATAACATCATAAAAGTGCTTGCTATGAACACTTTCAACTGCTTGGAACCCATGTCATTATGTATATCTGAGAGTTGCGAAATTGATGTACCGGCTTTTATTGATCGTATTCGAGATGGAGTTGTAAAAAATGTGGAAGTGCAGGGTGACAAGATAAGGAACTGCAACAGTTGGTCAAGATGGATTCAAGCAGCCTCCGGAAGTTCAGGATCATCTGTGACTGAGGGCATAATCAAACAAGATGCGTTTCAAGTTCCTGATATGAGCCAAGAACAGGATACCGACAGTCATCAATTCAATGATAATATATCACATGCAGTAACAAGCAGACTGAAACCTCTCATACTTCAAGTTTGTGGTGATTGTGCGTGGGGAATTCGAGACTTGAGCTACTCCATTGCCTGCATTCCAACGTACAGTACGAGGGAATCGATTAATGGCGCATTGAAACAACTTTGTTCATAA 2062 0.4302 YASQVPPGYATVQFNKSGNLLQTINWKHLKRMRINQNLSCPLHSTTLGLTRVWIRQSIPSRTTIEVLEINNSDDKSDVDGSSGNATPLRINPVSDPFVADALLALPEPLRERVTPKPLAKHCGRKSQNTQANYQYTNHHKVVLLQIVAPARTDVSEHQKLTSQVHEIVGRINGRFGTLIAVPIHHLDRSLDFHALRASYAVTDVALVASLRCNTIPWCWCYLGKSSEKETVQISDGKVGVGPTNTEAPGTGNGHGRTHVSNAKSIKGHRKPSQSFIGVIELLLESICTCVPPSKDDNTSNVLPGTTTLSDMYIDVSMNKGKGKADVFEQLMHGQSKLDPSRNNLLDQVMKKLSTAAEHPRALHPSLSSAVKELVENSLDAGATSIKISLKDFGEEWFQVIDSGCGISPNNCKVLALKHHTSKLSEFHDLQSLITFSFRGEASSSLCALGNLTVETKTARQVGTTVTVKKLFYNLLVRSKEFKRNIHKEYGKLVSLLNTYALIAKGVRFGCTNTTGKNAKPVVLKTQGNDSLKDNIIKVLAMNTFNCLEPMSLCISESCEIDVPAFIDRIRDGVVKNVEVQGDKIRNCNSWSRWIQAASGSSGSSVTEGIIKQDAFQVPDMSQEQDTDSHQFNDNISHAVTSRLKPLILQVCGDCAWGIRDLSYSIACIPTYSTRESINGALKQLCS* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4640 686 MobiDBLite consensus disorder prediction 235 256 - -
Psa4g4640 686 PANTHER MISMATCH REPAIR ENDONUCLEASE PMS2-RELATED 365 571 - -
Psa4g4640 686 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 366 466 - -
Psa4g4640 686 Gene3D - 344 539 IPR036890 -
Psa4g4640 686 Pfam Glycosyltransferase family 20 137 211 IPR001830 GO:0003824|GO:0005992
Psa4g4640 686 Gene3D Glycogen Phosphorylase B; 129 215 - -
Psa4g4640 686 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 365 571 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Psa4g4640 686 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 363 535 IPR036890 -
Psa4g4640 686 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 138 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4640 Psa-Chr4 412325146 412328722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4640 140 211 Trehalose Biosynthesis Gene Families AT1G78580 87.500 8.66e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4640 K10858 - gmx:100802535 315.079