Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4638 ATGAATATGATGCGTCGCCTCAAGAGCATTGCTTCTGGGAGGACTTCGATTTCTTCAGATCCTGGAGGGGATTCTAATTCGAAAAGAGCTAAGTTTGATCAAGAAACCGAGAAGGTCTTTGATGGAAAAAATACTTTGAGTAGAAGTGTTCGGGAGCAGCCTTTAAGTAGAAGTGTTCGGGAGCAGCGTGTGGATGCATCAAAAGAAGCTACAGTTGGGACTTCTAATGTAGCTACAGTAACTAAAACTGAGAAGTTGGGTTTTGATGAACTTCCAAAAGAATTGCATGAGATGAAAATTAGAGACGAGAAAAGAACGAACAACAACGAGAAGGAAATAGAAGCAACTACAGTGAGTGGCAATGGAACAGAAACAGGTCAAATTATTACCACAACTATTAGTGGTCGAGATGGACAACCAAAGCAGACAATCTCGTACATGGCCGAACGCGTGGTTGGAACTGGCTCTTTCGGTGTTGTTTTTCAGGCTAAGTGTCTTGAAACTGGGGAAGCGGTTGCCATAAAAAAAGTGTTGCAAGACAAGAGATATAAGAACAGGGAACTCCAAGTTATGCGCATGGTTGACCATCCTAATGTTGTTAAGTTGAAGCACTGTTTCTATTCAACTACTGAAAAAGATGAGCTGTACCTTAACCTTGTTTTGGAGTATGTACCTGAAACTGTTTACAAAGTTTCAAAGAACTATAGCCGGACACACCAACATATGCCTATCATTTACGTGCAGCTGTATACATACCAGATTTTACGGGGATTAAATTATTTACATGAAGTGATTGGCGTTTGTCATCGAGACATCAAACCACAGAACCTATTGGTCAATCAACAGACCCATCAGTTGAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCCAACATTTCGTACATATGCTCAAGATATTATAGAGCTCCAGAACTTATATTTGGAGCAACTGAATACACAACTGCTATTGATATGTGGTCTGCTGGTTGTGTTTTGGCTGAGCTTCTTCTAGGACAGGCATTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTGGAGATCATTAAGGTCCTGGGAACACCAACCAGAGAAGAAATAAGGTGCATGAATCCACACTACAATGAATTTAAGTTCCCGCAGATTAAAGCACACCCGTGGCACAAGCTTTTTCACAAGAGAATGCCATCTGAAGCAGTGGATCTAGTGTCAAGGTTACTTCAATATTCTCCACATCTACGTTGCACCGCATTGGCAGCATGTGCCCACCCATTCTTCGATGATCTTCGAGACCCAAAAGCAAGCCTGCCAAATGGACAACCACTACCTCCTTTGTTCAACTTCACACCTCAAGAAATGGTAAATGTCCCCGACGAGTTGCGGCAACGTCTCATTCCTGAGCATGCAAGGAGTTAA 1428 0.4244 MNMMRRLKSIASGRTSISSDPGGDSNSKRAKFDQETEKVFDGKNTLSRSVREQPLSRSVREQRVDASKEATVGTSNVATVTKTEKLGFDELPKELHEMKIRDEKRTNNNEKEIEATTVSGNGTETGQIITTTISGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQVMRMVDHPNVVKLKHCFYSTTEKDELYLNLVLEYVPETVYKVSKNYSRTHQHMPIIYVQLYTYQILRGLNYLHEVIGVCHRDIKPQNLLVNQQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSAGCVLAELLLGQALFPGESGVDQLVEIIKVLGTPTREEIRCMNPHYNEFKFPQIKAHPWHKLFHKRMPSEAVDLVSRLLQYSPHLRCTALAACAHPFFDDLRDPKASLPNGQPLPPLFNFTPQEMVNVPDELRQRLIPEHARS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4638 475 SMART serkin_6 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4638 475 MobiDBLite consensus disorder prediction 26 45 - -
Psa4g4638 475 Gene3D Transferase(Phosphotransferase) domain 1 226 474 - -
Psa4g4638 475 CDD STKc_GSK3 141 433 IPR039192 -
Psa4g4638 475 MobiDBLite consensus disorder prediction 1 70 - -
Psa4g4638 475 Pfam Protein kinase domain 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4638 475 ProSiteProfiles Protein kinase domain profile. 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4638 475 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 475 - -
Psa4g4638 475 ProSitePatterns Protein kinases ATP-binding region signature. 152 176 IPR017441 GO:0005524
Psa4g4638 475 PANTHER SHAGGY-LIKE KINASE 6 475 - -
Psa4g4638 475 SUPERFAMILY Protein kinase-like (PK-like) 145 458 IPR011009 -
Psa4g4638 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Psa4g4638 475 MobiDBLite consensus disorder prediction 9 25 - -
Psa4g4638 475 Gene3D Phosphorylase Kinase; domain 1 130 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4638 Psa-Chr4 412312351 412317488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4638 152 440 Core Cell Cycle Gene Families AT1G76540 36.364 1.34e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Psa4g4638 Pkinase 4.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4638 K00924 - gmx:100811346 802.742