Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4632 ATGAGTTTTGGGGGTTTTGTAGAGAACAATTCAGGGGGTGGTGGAGGTGTGAGAAACATAGGAGGAGAAATTTCTTACAACAACGAAAGAATGCCATTTGGCTCTTTCTCACAGCCTCGTCTTGTTACAACTCCAACTTTGGCTAAATCTATGTTCAACTCTTCTGGATTGTCACTTGCACTTCAAACTAATATTGATGGACAAGAAGATGTGAATAGATCAATGCATGAGAATTTTGAGCAAAATGGTTTGAGAAGGAGTAGAGAAGAGGAACAAAGTAGATCTGGTAGTGATAACTTGGATGGTGTTTCTGGTGATGAACAAGATGCTGATGATAAACCTCCTAGAAAAAAGAGATATCACCGACACACTCCTCAACAGATTCAAGAGCTTGAAGCTTTGTTTAAGGAGTGTCCTCACCCAGATGAAAAGCAAAGATTGGAACTTAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACTCAATTGGAAAGGCATGAGAACTCATTGCTTAGGCAAGAGAATGATAAGCTACGAGCCGAGAATATGTCTATAAGGGATGCAATGAGGAATCCTATATGTTCAAATTGTGGTGGTCCAGCTATAATCGGCGAGATTTCACTAGAGGAACAACATCTTCGCATCGAGAATGCAAGGTTGAAAGATGAACTAGATAGAGTTTGTGCACTTGCTGGAAAATTTTTAGGCCGTCCGATTTCTTCATTGCCAAACTCAAGTTTAGAACTTGGTGTTGGAGGGAACAACAATGGTTTTAATGTGATGAACAATGTTTCTTCGACATTACCTGATTTTAGTGGAGGGATGAATAATAACCCTCTAGCCATTGTGTCTCCTTCAACTAGACCAACAACTTTGGTGGGTGGGTTTGATAGATCGGTCGAAAGGTCTATGTTTCTTGAGCTTGCTTTGGCTGCTATGGATGAGTTGGTTAAGATGGCACAAACTAGTGAGCCTCTTTGGATTAGGAGTCTCGAAGGGGGAAGAGAGATTTTGAACCATGATGAATATTCGAGGACGTTTACTCCTTGCATTGGTTTGAGACCTAATGGTTTTGTCTCCGAGGCCTCTAGAGAGACCGGCATGGTCATAATCAATAGCTTGGCCCTTGTCGAGACTCTTATGGACTCGAATCGATGGATTGAGATGTTTCCATGTATCATTGCAAGAACCTCAACAACCGAAGTGATATCGAATGGAATAAACGGAACAAGAAATGGTGCACTTCAACTAATGCAAGCTGAACTGCATGTGCTATCACCATTGGTTCCGGTTCGCGAGGTAAACTTCCTTAGGTTTTGCAAGCAGCATGCAGAAGGGGTTTGGGCTGTAGTCGACGTGTCTATCGACACCATTCGAGAAACCTCCGGAGCTACAAGTTTTCCAAACTGTAGAAAGCTTCCTTCTGGTTGTGTTGTGCACGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATGCAGAATATGAAGAAAACACAGTCCACCAGCTGTACAGACCACTGTTGAGTTCAGGTATGGGATTCGGTGCGACACGTTGGGTCGCTACTCTACAACGTCAGTGCGAGTGTCTTGCCATATTAATGTCCTCCGCCGCACCCTCTCGAGACCACTCCGCAATAACAGCAGGAGGAAGGCGGAGCATGCTGAAGCTAGCGCAGCGAATGACTAACAACTTCTGCGCGGGGGTATGTGCATCCACGGTTCACAAATGGAACAAGCTGAGTCCCGGAAACGTGGACGAAGATGTAAGAGTGATGACACGGAAAAGCGTCGACGACCCAGGCGAGCCACCAGGGATCGTGTTGAGCGCAGCCACATCGGTATGGCTCCCAGTTTCGCCTCAAAGACTGTTCGACTTTCTTCGCGACGAGAGGCTTCGTAGCGAATGGGATATACTATCCAACGGGGGTCCCATGCAAGAAATGGCTCACATTGCCAAAGGACAAGATCATGGCAACTGCGTTTCTCTTCTCCGTGCTAGTGCTATGAATTCGAACCAGAGTAGTATGCTGATACTACAAGAAACATGCATAGACGAGGCTGGGTCGCTTGTAGTCTACGCGCCGGTGGATATTCCAGCCATGCATGTTGTAATGAACGGTGGTGATTCAGCTTACGTGGCTTTGTTACCTTCCGGTTTCGCTGTTGTCCCCGACGGGCCTGGATCTCGTGGGCCGGAGAACGGGTCTACTGCGAACGGTGGCGAGTCTCGTGTTAGCGGGTCTCTTTTAACAGTGGCGTTTCAGATCCTTGTGAATAGTCTTCCCACGGCGAAACTCACCGTGGAATCAGTTGAAACAGTGAACAATCTCATTTCTTGCACCGTTCAGAAAATCAAAGGTGCACTTCAATGTGAAAGCTGA 2424 0.4571 MSFGGFVENNSGGGGGVRNIGGEISYNNERMPFGSFSQPRLVTTPTLAKSMFNSSGLSLALQTNIDGQEDVNRSMHENFEQNGLRRSREEEQSRSGSDNLDGVSGDEQDADDKPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLPNSSLELGVGGNNNGFNVMNNVSSTLPDFSGGMNNNPLAIVSPSTRPTTLVGGFDRSVERSMFLELALAAMDELVKMAQTSEPLWIRSLEGGREILNHDEYSRTFTPCIGLRPNGFVSEASRETGMVIINSLALVETLMDSNRWIEMFPCIIARTSTTEVISNGINGTRNGALQLMQAELHVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGATSFPNCRKLPSGCVVHDMPNGYSKVTWVEHAEYEENTVHQLYRPLLSSGMGFGATRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLSPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAVVPDGPGSRGPENGSTANGGESRVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKGALQCES* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4632 807 CDD START_ArGLABRA2_like 314 542 - -
Psa4g4632 807 MobiDBLite consensus disorder prediction 79 124 - -
Psa4g4632 807 SMART START_1 319 543 IPR002913 GO:0008289
Psa4g4632 807 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 66 804 IPR042160 -
Psa4g4632 807 Pfam Homeodomain 117 172 IPR001356 GO:0003677
Psa4g4632 807 SMART HOX_1 115 178 IPR001356 GO:0003677
Psa4g4632 807 ProSitePatterns 'Homeobox' domain signature. 149 172 IPR017970 GO:0000981|GO:0006355
Psa4g4632 807 ProSiteProfiles START domain profile. 310 546 IPR002913 GO:0008289
Psa4g4632 807 ProSiteProfiles 'Homeobox' domain profile. 114 174 IPR001356 GO:0003677
Psa4g4632 807 SUPERFAMILY Bet v1-like 571 800 - -
Psa4g4632 807 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 66 804 - -
Psa4g4632 807 SUPERFAMILY Homeodomain-like 102 174 IPR009057 -
Psa4g4632 807 Pfam START domain 319 543 IPR002913 GO:0008289
Psa4g4632 807 Coils Coil 168 200 - -
Psa4g4632 807 CDD homeodomain 116 174 IPR001356 GO:0003677
Psa4g4632 807 SUPERFAMILY Bet v1-like 312 543 - -
Psa4g4632 807 MobiDBLite consensus disorder prediction 79 96 - -
Psa4g4632 807 Gene3D - 103 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4632 Psa-Chr4 411723741 411729496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4632 1 807 Homeobox Transcription Factor Family AT3G61150 65.018 0.0 1034
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa4g4632 START 2.2e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4632 K09338 - gmx:100811873 1335.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4632 4 411723741 411729496 Psa4g4632 4 411723741 411729496 ECH