Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g4620 | ATGGCTATTCCAAAAGTGAATGAAAAGTTGCTTGAAGACCTTGAAGTTATGGGATTTCCACATGCAAGAGCAACAAGAGCACTCTATCATTCTGGAAATACCACCTTAGAAGATGCTATAACATGGATGATTGATCATGAAAATGACACTGATATTGATGAGTTTCCATTGGTTGATATAGACATTGATATTGATGCTTCTCCATCATTTCCTATCACAGAAGAAATGAGAATGAAAGCTTATAGTTTAAGGGAACAAGAGAGAAAGAGGAAAAGGAATGAAGAAACAATCATGGAAAGAGAAAGAGAAAAGGAGAGGATTCAAGCCGGTAAGAAACTCCTTGAGGCGAAGCGAATCGCGGAAGAAAATGAAAGAAAACGGAATTTAGCTTTGAGAAAAGCTGAAAAAGAAGAAGAACAAAGAGCTAGAAATAACATTCTCAAGAAACTAGATCAGGATAAGTTAAATAGAAGGTCTAAACATGGATTACCCTTAGAAAGCCAAGAAAATGTGAGATCAACAGCCATTGTAATAAAGCATGACAAGGTTACAAGGCCTGTTTATACAACCACAAAAGTTGAACATTTGAGAGAATGTTTGAGGTCTCTCAAGCGTGAGCACAAGGGTGAGAATGCAAGAATCAGAAGGGCCTTTGAAACACTTCTAGTGTATGTTGGAAATGTTGTCAAGAATCCAAAGGAGGAAAAATTCAGGAAGATTAGACTGAGCAATCCATTATTTCAGGATAGAGTTGGAAGTTTAAATGGAGGTGTGGAGTTTCTTGAGCTATGTGGTTTTGAGACAACAGATGACTTCTTGTATCTTCCTAGTGAAAAGGTTGACATTGAACTTCTAAGTTTAGCTGGTTTTGTCTTAAATTCTGCTATCACTAATCCTTTCTTTGGACTTTTGAGTACTTAG | 921 | 0.3681 | MAIPKVNEKLLEDLEVMGFPHARATRALYHSGNTTLEDAITWMIDHENDTDIDEFPLVDIDIDIDASPSFPITEEMRMKAYSLREQERKRKRNEETIMEREREKERIQAGKKLLEAKRIAEENERKRNLALRKAEKEEEQRARNNILKKLDQDKLNRRSKHGLPLESQENVRSTAIVIKHDKVTRPVYTTTKVEHLRECLRSLKREHKGENARIRRAFETLLVYVGNVVKNPKEEKFRKIRLSNPLFQDRVGSLNGGVEFLELCGFETTDDFLYLPSEKVDIELLSLAGFVLNSAITNPFFGLLST* | 307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g4620 | 306 | SUPERFAMILY | PUG domain-like | 188 | 300 | IPR036339 | - | |
| Psa4g4620 | 306 | Coils | Coil | 119 | 140 | - | - | |
| Psa4g4620 | 306 | SUPERFAMILY | UBA-like | 6 | 56 | IPR009060 | GO:0005515 | |
| Psa4g4620 | 306 | PANTHER | F13M7.16 PROTEIN | 1 | 306 | - | - | |
| Psa4g4620 | 306 | PANTHER | PUB DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 306 | - | - | |
| Psa4g4620 | 306 | Pfam | PUB domain | 214 | 281 | IPR018997 | - | |
| Psa4g4620 | 306 | Gene3D | - | 8 | 53 | - | - | |
| Psa4g4620 | 306 | Gene3D | - | 195 | 294 | - | - | |
| Psa4g4620 | 306 | SMART | PGNneu | 216 | 277 | - | - | |
| Psa4g4620 | 306 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Psa4g4620 | 306 | Coils | Coil | 83 | 104 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa4g4620 | Psa-Chr4 | 410961207 | 410963366 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g4620 | 1 | 304 | C2H2 Transcription Factor Family | AT1G04850 | 55.844 | 3.62e-95 | 283 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa4g4620 | K24348 | - | gmx:100781260 | 456.447 |