Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4598 ATGGCTGGAGCTGAAGCTACTAAATATGCTTCTGCTACAAACAGCATAACAAAATCAAAGAAGCCAAACATGAGAAGATTCATTGGTGTAAGACAAAGGCCATCAGGTAGATGGGTAGCTGAGATCAAAGACTCATCTCAACATGTAAGATTATGGCTTGGAACGTATGACACACCAGAAGAAGCAGCTCGGGCCTACGACGAAGCCGCTCGAGCTTTACGTGGCGAAAATGCTCGAACAAATTTCGCCGCAGCATCAGAAACCACTACACCAGTTAATGATGATCAGGGACTATTACCATCACCACAAACAAATGAAGGAAAAAACAACAGTTTAACTTTTGCTTCACTGAGAGCAAAACTGAGCAAGAATCTTCAAAGTATTATGGCAAGAACTAGCGAACATCATAACAACAGCAACAAGTTTTCAAAGAGTAGAGTGAGTGATCATTTCACCTTTGCTAGCATATTCAACCGTAAGAATAATTACCACCAAATCTCCGCGGTTGATATGAAGAACATTGAAAAAGTGGTCCAGCCTAGCATTATTGTTCCTCCTGTTGAATCTTCAAGTGTTTCTGATTGTAGTTCTGAATGGTTTGGTTTTCAGAATCATGGATTAGACTCTGATGGATCTGATATAGTGGAGAATAACAATAATAATAATAATATTAATAATATTAATAATGTTGGTTTTAATGTTGGTGATCAAGGTTTTTTGGATCAACTCTTGGGGTGGATTGATGATAGTTCTGATATTTGTGAAGGTTCAAGTAGTAAGAGGTTTAAGGTATCTTCTTCTGTTCTTGTGCCTCCAACTTTCTCTAGCTCTCCCTATGATTGTGGTTCACCTTATAGTGGTTATGCCTCTCCTTATAATAGTTGTGGCTCTCCTTGCAATGGATATGCATCTCCTTATTATGGTAACAAGAAGTAA 936 0.3846 MAGAEATKYASATNSITKSKKPNMRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAAASETTTPVNDDQGLLPSPQTNEGKNNSLTFASLRAKLSKNLQSIMARTSEHHNNSNKFSKSRVSDHFTFASIFNRKNNYHQISAVDMKNIEKVVQPSIIVPPVESSSVSDCSSEWFGFQNHGLDSDGSDIVENNNNNNNINNINNVGFNVGDQGFLDQLLGWIDDSSDICEGSSSKRFKVSSSVLVPPTFSSSPYDCGSPYSGYASPYNSCGSPCNGYASPYYGNKK* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4598 311 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 259 - -
Psa4g4598 311 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Psa4g4598 311 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Psa4g4598 311 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Psa4g4598 311 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Psa4g4598 311 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Psa4g4598 311 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Psa4g4598 311 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 259 - -
Psa4g4598 311 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Psa4g4598 311 SUPERFAMILY DNA-binding domain 27 83 IPR016177 GO:0003677
Psa4g4598 311 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4598 Psa-Chr4 410585414 410587162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4598 17 83 AP2-EREBP Transcription Factor Family AT5G19790 70.588 6.56e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa4g4598 AP2 1.1e-15 CL0081