Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4597 ATGGAAAATCGTCCAAGAATAACACTCTATGATCAAATGACTTCATCCAGTAACACAACAAGCAACACTCGAAGCTCACTTGCAACGTTAATCCAAAGCGACGCCGTTTTCGCCATTCAGAAAACCCGAAACCAAACTCTCTTAGACATTATACGAGAAAACGAACCCAACAACGTTGTTGATAACAGCAACAATACAAAAGATCGAAAATCGTGGAAAGCTTTTAAGGAATTACTTCGTCTAAAGCGTCGTAACTCGGACGAGTCAACTCAACAACAACAACAACAAAACGACGTCGTTCGGGAAGATCTGAACAATTCGGATCCGGTCGAATTGCTCGCCGGCGGGGAGTCCTCCGACGAGGAAATGAACGTTAATAGCTCGGAGACGGCGCAGGTTAGTATGTCGCTGATGGATTTGTTAGAAGAGAGTGAAATTGATTTGGATCGAATTGGTGATGTTGACGAAGGTGATGACGTGGATGAGAAACGAGAAGAAGAAGAAGGGAATGTTTCGGTGGAACGCAATTGCTGCGTGTGTATGGTGAGGCATAAAGGTGCAGCGTTTATACCGTGTGGACACACGTTTTGCAGGATGTGTTCAAGAGAACTATGGGTGAGTAGAGGAAATTGTCCTCTTTGCAATAATTTGATATTGGAAGTTCTTGATATTTTCTAA 678 0.4322 MENRPRITLYDQMTSSSNTTSNTRSSLATLIQSDAVFAIQKTRNQTLLDIIRENEPNNVVDNSNNTKDRKSWKAFKELLRLKRRNSDESTQQQQQQNDVVREDLNNSDPVELLAGGESSDEEMNVNSSETAQVSMSLMDLLEESEIDLDRIGDVDEGDDVDEKREEEEGNVSVERNCCVCMVRHKGAAFIPCGHTFCRMCSRELWVSRGNCPLCNNLILEVLDIF* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4597 225 MobiDBLite consensus disorder prediction 83 107 - -
Psa4g4597 225 PANTHER OS01G0917900 PROTEIN 117 225 - -
Psa4g4597 225 PANTHER OS01G0917900 PROTEIN 14 105 - -
Psa4g4597 225 MobiDBLite consensus disorder prediction 88 103 - -
Psa4g4597 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 225 IPR013083 -
Psa4g4597 225 SMART ring_2 177 214 IPR001841 -
Psa4g4597 225 SUPERFAMILY RING/U-box 176 221 - -
Psa4g4597 225 CDD RING-HC 177 214 - -
Psa4g4597 225 PANTHER OS01G0917900 PROTEIN 117 225 - -
Psa4g4597 225 PANTHER OS01G0917900 PROTEIN 14 105 - -
Psa4g4597 225 Pfam Zinc finger, C3HC4 type (RING finger) 174 218 - -
Psa4g4597 225 ProSiteProfiles Zinc finger RING-type profile. 177 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4597 Psa-Chr4 410479106 410484660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4597 3 225 C3H Transcription Factor Family AT3G25030 37.023 6.10e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4597 - - cam:101511225 290.812