Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4594 ATGAAGCCGATCTTTTGTGGAAACCTGGATTTCGATGCAAGACAATCTGATGTTGAGAGGCTTTTCAGAAAATACGGCAAGATTGATAGAGTGGACTTGAAGTCTGGTTTTGCTTTTGTCTACATGGACGATGAACGTGATGCCGAGTATGCAATTAGACGGCTTGATCAAACAGAATTTGGTAGAAAAGGGCGCCGAATTCGTGTCGAATGGACCAAGCAAGAGCGTGACAACAGAAGGTCTGGTGGTGATTCAAAGAAATCTTCAACTAATACAAGACCATCGAAGACTTTGTTTATTATAAATTTTGATCCTGTTCACACCAGGACAAGGGACTTAGAGAGACACTTTGATCCCTATGGGAAAATATCAAATTTAAGGATCAGAAGGAATTTTGCTTTTATCCAGTTTGAAACCCAGGAGGAAGCCACTAAAGCGTTGGAAGCAACTAACCTGAGCAAGTTTATGGACCGCGTTATCACTGTGGAGTATGCTATAAGAGATGACGATGTCAAAAAGGATGGATACAGTCCTGATAGGAGAGGTCGCGGCTCCCCTGATGGGAGGTATGGTCGTGGCAGATCTCCGAGTCCTTATCGTAGAGGTAGGGGTAGCCCTGATTATGGTAGAAGTAGGGGTAGCCCTGATTATGGTCGTGGATCAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATGAATGGGAGATATGATAGCCGATCTCCTCCACCTCGTGGATCAAATCAATCTTCCAGACCAGAACCTAGAGGAAGCCCCGAGCATGAACGAGCTGAAAGCCCAATGAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTGATAGGTCAAGATCCTGA 885 0.4565 MKPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFVYMDDERDAEYAIRRLDQTEFGRKGRRIRVEWTKQERDNRRSGGDSKKSSTNTRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKKDGYSPDRRGRGSPDGRYGRGRSPSPYRRGRGSPDYGRSRGSPDYGRGSNPASRPEPRGSPKYERAESPMNGRYDSRSPPPRGSNQSSRPEPRGSPEHERAESPMNGRYDSRSPPPRDRSRS* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4594 294 MobiDBLite consensus disorder prediction 264 294 - -
Psa4g4594 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Psa4g4594 294 Gene3D - 1 86 IPR012677 -
Psa4g4594 294 Gene3D - 87 176 IPR012677 -
Psa4g4594 294 MobiDBLite consensus disorder prediction 72 86 - -
Psa4g4594 294 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 254 - -
Psa4g4594 294 PANTHER - 4 254 - -
Psa4g4594 294 MobiDBLite consensus disorder prediction 173 188 - -
Psa4g4594 294 MobiDBLite consensus disorder prediction 173 294 - -
Psa4g4594 294 SMART rrm1_1 3 70 IPR000504 GO:0003723
Psa4g4594 294 SMART rrm1_1 97 163 IPR000504 GO:0003723
Psa4g4594 294 SUPERFAMILY RNA-binding domain, RBD 4 167 IPR035979 GO:0003676
Psa4g4594 294 MobiDBLite consensus disorder prediction 72 92 - -
Psa4g4594 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Psa4g4594 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Psa4g4594 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4594 Psa-Chr4 410342543 410345961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4594 4 170 Eukaryotic Initiation Factors Gene Family AT1G49760 23.497 8.81e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4594 K12893 - gmx:100797778 405.986