Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4593 ATGGTGGAAGATAGTACAGTTTCTGTTACAGTTGATACATGTTCAACAGAAGAATGGTTGTTGAACTCACAAGAACTTGTTCCTATTGCTCTTACTAAAGCAAAAGAGGTAAAAGGGTTTCTAGGTAGATGGAAAATGATCGTTTCGAAATTGGAACAAGTTCCGTCGAAGCTGTCAGATTTATCTAGCCACCCTTGTTTTTCAAAGAATGCTCTTTGCAAGGAACAATTGCAGGCTGTGTCGAAGACGTTAAGAGAAGCTATTGAATTAGCGGAGTTATGTTTGAAGGAAAAGTATGAAGGTAAACTAAGGATGCAGAGTGATCTCGACGCGATGATTGGAAAACTTGATTTGAATTTGAAGGATTGTAGTTTGTTGACAAAAAGTGGTGTGCTTGGAGAAGCTACTTTGCAGTTCAATGTTTCGGGTATTATAGCCGAATCGGATATTGCAACGCATGGAAATATAAAGGAATTACTCGCGCGCCTTCAAATTGGTCATTTGGAGTCGAAAGATAAAGCTTTGGATAGATTACATGAGATTATGAAAGATGATGAGAAGACTGTTTTGGCTGCTTTTTGCAGGAGCAATGTTGCTGCTTTGGTTCAGTTGCTTACTGCAACATCACCGAGGATTCGGGACAAAACGGTTAGTATTATATGCTCGATTGTGGAGTCGGGTAGTAGCTGCGAAAACTGGTTGGTTTCTGAAGGTGTTTTGCCACCTCTTATAAGGCTTGTTGAATCAGGTAGTGCATTTGGTAAAGAAAAGGCTATTGTATCTCTTCAAAGGTTATCGATGTCGGAAGAGACTACTCGCGCGATCGTCGGACACGGAGGGGTTCGTCCGTTAATCGAGCTTTGTCAGGTTGGCGATTCTGTCTCACAGGCGGCGGCAGCTTGTACTTTGAAGAATATTTCGGCTGTTCCAGAAGTGAGACAGGTTTTAGCTGAAGAAGGCGTTGTTCGGGTTATGATCAATCTCCTCAACAACGGAATGCTGTTAGGTACTAAAGAGTATGCTGCCGAATGTTTGCAGAATCTCACCGCAAGCAATGAGAATCTGAGAAGGTCTGTTATATCCGAAAACGGCATTCAAAGCCTTTTGGCTTTTCTCCACTCTCCAGTTCCTCAAGAATCCGCCGTAGGCGCGTTGAAGAATCTCGTCGGATCGGTTTCCGAAGAAACCTTGGTTTCTCTCGGAGTTCTTTCTTGTCTGGTCCATATTTTGAAGTCAGGATCATTAGGCGCGAAACAAAATGCCGCGTCCATTATATGCAGGATTTGTAGCTCGATCGAGATGAAGAAAATGCTAGGCGAAGTTGGTTGCATACCTCTATTGATCAACATGCTCGAGGCGAAAGCAAACACTGCTAGAGAACTTGCAGCGCAAGCAATAGCGAGTTTGATGATTCTGTCGCAGAATCGGCGAGAAGTTAAAAAGGATGTTAAAAGCGTGCCGAATTTGGTACAGTTGCTTGATCCTAGTCCACAGAATACTGCAAAGAAATATGCAGTTTGTTGTCTTGGATCACTTTCTTCATGTAAGAAGTGTAAGAAGTTGATGATTTCATATGGAGCAATAGGGTATTTGAAGAAGCTTATTGAAATGGAGATTCCAGGAGCTAAAAAGTTGCTTGAGAGATTGGAAAGAGGGAAATTGAGAAGCTTGTTTAGCAGAAAATAG 1686 0.4217 MVEDSTVSVTVDTCSTEEWLLNSQELVPIALTKAKEVKGFLGRWKMIVSKLEQVPSKLSDLSSHPCFSKNALCKEQLQAVSKTLREAIELAELCLKEKYEGKLRMQSDLDAMIGKLDLNLKDCSLLTKSGVLGEATLQFNVSGIIAESDIATHGNIKELLARLQIGHLESKDKALDRLHEIMKDDEKTVLAAFCRSNVAALVQLLTATSPRIRDKTVSIICSIVESGSSCENWLVSEGVLPPLIRLVESGSAFGKEKAIVSLQRLSMSEETTRAIVGHGGVRPLIELCQVGDSVSQAAAACTLKNISAVPEVRQVLAEEGVVRVMINLLNNGMLLGTKEYAAECLQNLTASNENLRRSVISENGIQSLLAFLHSPVPQESAVGALKNLVGSVSEETLVSLGVLSCLVHILKSGSLGAKQNAASIICRICSSIEMKKMLGEVGCIPLLINMLEAKANTARELAAQAIASLMILSQNRREVKKDVKSVPNLVQLLDPSPQNTAKKYAVCCLGSLSSCKKCKKLMISYGAIGYLKKLIEMEIPGAKKLLERLERGKLRSLFSRK* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4593 561 SUPERFAMILY ARM repeat 154 540 IPR016024 -
Psa4g4593 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 364 IPR000225 GO:0005515
Psa4g4593 561 Pfam Armadillo/beta-catenin-like repeat 269 308 IPR000225 GO:0005515
Psa4g4593 561 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 561 - -
Psa4g4593 561 Gene3D - 394 542 IPR011989 -
Psa4g4593 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Psa4g4593 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 561 - -
Psa4g4593 561 Gene3D - 149 393 IPR011989 -
Psa4g4593 561 SMART arm_5 185 225 IPR000225 GO:0005515
Psa4g4593 561 SMART arm_5 268 308 IPR000225 GO:0005515
Psa4g4593 561 SMART arm_5 309 350 IPR000225 GO:0005515
Psa4g4593 561 SMART arm_5 351 390 IPR000225 GO:0005515
Psa4g4593 561 SMART arm_5 431 471 IPR000225 GO:0005515
Psa4g4593 561 SMART arm_5 391 430 IPR000225 GO:0005515
Psa4g4593 561 SMART arm_5 473 514 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4593 Psa-Chr4 410257205 410261389 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4593 400 544 U-box Gene Family AT1G23030 30.137 3.54e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4593 - - gmx:100809488 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2621 3 219178271 219181779 Psa4g4593 4 410257205 410261389 PCT