Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4587 ATGAAGATCATCGCGGCGTATTTGTTGGCCGTTTTGGGAGGTAACACAGCCCCTTCCGCCGTCGATGTCAAACGCATCCTAGGCTCAGTTGGAGTTGAGGGAGAAGATGAGCAGATTGAGTTGCTGTTGAGGGAAGTCAAAGGAAAAGATTTTGCTGAGCTAATTGCCAGTGGAAGAGAGAAATTGTCTTCAGTTCCTTCTGGTGGAGGTGCTGTAGCTGTTTCTGCTGTATCTGGTGGCGGTGCTGCAGCCGCTGCACCTCCTGCCAAAGCAAAAGAAGAAAAGAAGGTTGAAGAAAAGGAAGAGTCTGATGATGATATGGGCTTCAGTTTGTTTGACTAG 342 0.4825 MKIIAAYLLAVLGGNTAPSAVDVKRILGSVGVEGEDEQIELLLREVKGKDFAELIASGREKLSSVPSGGGAVAVSAVSGGGAAAAAPPAKAKEEKKVEEKEESDDDMGFSLFD* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4587 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Psa4g4587 113 MobiDBLite consensus disorder prediction 89 103 - -
Psa4g4587 113 Pfam 60s Acidic ribosomal protein 18 112 - -
Psa4g4587 113 Gene3D - 1 59 IPR038716 -
Psa4g4587 113 MobiDBLite consensus disorder prediction 81 113 - -
Psa4g4587 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Psa4g4587 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 113 - -
Psa4g4587 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4587 Psa-Chr4 409387937 409389924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4587 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 74.286 4.13e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4587 K02943 - aof:109825870 124.02