Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4580 ATGGTGAGAGGAAAGACAGAAATGAAGCTTATAGAGAACCCAACAAGTAGACAAGTAACATTTTCAAAGAGAAGAAATGGTTTGATGAAAAAAGCTTTTGAATTATCAATTTTGTGTGATGCTCAAGTTGCTCTTATTGTTTTCTCACAAAGAGGAAGACTTTATGAATTTGCAAGTTCAAGGAATTACGACTCTAGTGGTAACGTAGTTGAGCCTGATATCCAGGATGGGAAGTGGGAGTTTTGGCGTTATTGTTGTGATAGTTTGAGACGGATCTGCAAGACCATTCAGGCTACACCTATCTTTGCTATTAGAGATCCGATTGCAAACACCAGGTCTTTTCTTAGGGCACAGAAACATAAGGCCAACTCGGGGAAGGTTCATATCAATTTGGAAGTGGGTGCCTCTATAGACCTGGAGAAGGGAATTTCCATGGAAGATGGTATTGCAAGCTCTCCCTAA 462 0.4026 MVRGKTEMKLIENPTSRQVTFSKRRNGLMKKAFELSILCDAQVALIVFSQRGRLYEFASSRNYDSSGNVVEPDIQDGKWEFWRYCCDSLRRICKTIQATPIFAIRDPIANTRSFLRAQKHKANSGKVHINLEVGASIDLEKGISMEDGIASSP* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4580 153 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Psa4g4580 153 PANTHER MADS BOX PROTEIN 1 60 - -
Psa4g4580 153 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa4g4580 153 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa4g4580 153 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa4g4580 153 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa4g4580 153 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa4g4580 153 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Psa4g4580 153 Gene3D - 13 75 IPR036879 GO:0003677|GO:0046983
Psa4g4580 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Psa4g4580 153 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Psa4g4580 153 PANTHER MADS-BOX PROTEIN SOC1 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4580 Psa-Chr4 408278510 408282950 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4580 1 60 MADS-box Gene Family AT5G62165 83.333 2.88e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa4g4580 SRF-TF 2.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4580 - - svs:117837179 108.997