Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4578 ATGGTGAGAGGAAAGACGCAGATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACATTCTCAAAGAGAAGAAATGGTTTGATGAAGAAAGCTTTTGAGTTATCAATTCTGTGTGATGCTCAAGTTGCTCTTATTGTTTTCTCACCAAGAGGAAGACTTTATGAATTTGCAAGTTCAAGCATTTTAGAAACAATAGAACGATACCGCAATCATACAAGGACCATAATACTCCAACACATCTGA 246 0.374 MVRGKTQMKRIENATSRQVTFSKRRNGLMKKAFELSILCDAQVALIVFSPRGRLYEFASSSILETIERYRNHTRTIILQHI* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4578 81 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Psa4g4578 81 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa4g4578 81 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa4g4578 81 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa4g4578 81 PANTHER MADS-BOX PROTEIN SOC1 1 74 - -
Psa4g4578 81 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa4g4578 81 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa4g4578 81 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Psa4g4578 81 PANTHER MADS BOX PROTEIN 1 74 - -
Psa4g4578 81 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Psa4g4578 81 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa4g4578 81 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4578 Psa-Chr4 408250617 408268358 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4578 1 74 MADS-box Gene Family AT2G45660 79.730 3.28e-42 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa4g4578 SRF-TF 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4578 - - mtr:MTR_8g033220 139.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4578 4 408250617 408268358 Psa4g4578 4 408250617 408268358 ECH