Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4577 ATGGTGAGAGGAAAGACGCAGATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACATCTCAAGAGAAGAAATGGTTTGATGAAAGAAAGCTTTTGAGTTATCAATTCTGTGTGATGCTCAAGTTGCTCTTTATTGTTTTCTCACCAAGAGGAAGACTTTATGAATTTGCAAGTTACAAGCTCATCTTAATACCCCGCCCACCACAAAGTCATGATGGCGGCTTAAGACATCACTTTGAGTTTGGAATAAAATTAAGGAACAAGTTGTCATGA 276 0.3877 MVRGKTQMKRIENATSRQVTSQEKKWFDERKLLSYQFCVMLKLLFIVFSPRGRLYEFASYKLILIPRPPQSHDGGLRHHFEFGIKLRNKLS* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4577 91 SUPERFAMILY SRF-like 3 61 IPR036879 GO:0003677|GO:0046983
Psa4g4577 91 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa4g4577 91 PANTHER MADS BOX PROTEIN 1 61 - -
Psa4g4577 91 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa4g4577 91 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa4g4577 91 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa4g4577 91 PANTHER MADS-BOX PROTEIN SOC1 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4577 Psa-Chr4 408240978 408241922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4577 1 62 MADS-box Gene Family AT2G45660 51.613 1.49e-14 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4577 - - mtr:MTR_8g033220 64.3142