Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4573 GCTCAACCTTTTATTCCTATCCATTCCCTGCTTCAAAATATTATCTTTCATTTTCTCAATATTTGGTGCAAATAAGTTTCCTTTTGAAGTTGCTTTTCTTGCTGTCTTAAGAATTCAATTCAACCCTAAGATTTTGCTTTCATTTGTTGCAAAGATGGTGAGAGGGAAGACGCAGATGAAGCGTATAGAGAACGCAACAAGCAGACAAGTAACATTCTCAAAGAGAAGAAATGGTTTGATGAAGATATGA 250 0.352 LNLLFLSIPCFKILSFIFSIFGANKFPFEVAFLAVLRIQFNPKILLSFVAKMVRGKTQMKRIENATSRQVTFSKRRNGLMKI* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4573 82 PANTHER MADS-BOX PROTEIN SOC1 52 81 - -
Psa4g4573 82 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 61 81 IPR002100 GO:0003677|GO:0046983
Psa4g4573 82 SMART madsneu2 52 81 IPR002100 GO:0003677|GO:0046983
Psa4g4573 82 SUPERFAMILY SRF-like 52 81 IPR036879 GO:0003677|GO:0046983
Psa4g4573 82 PRINTS MADS domain signature 74 82 IPR002100 GO:0003677|GO:0046983
Psa4g4573 82 PRINTS MADS domain signature 54 74 IPR002100 GO:0003677|GO:0046983
Psa4g4573 82 ProSiteProfiles MADS-box domain profile. 52 82 IPR002100 GO:0003677|GO:0046983
Psa4g4573 82 PANTHER MADS BOX PROTEIN 52 81 - -
Psa4g4573 82 Gene3D - 64 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4573 Psa-Chr4 407917761 407918273 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4573 52 81 MADS-box Gene Family AT2G45660 96.667 8.55e-15 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa4g4573 SRF-TF 8.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4573 - - nto:104109804 62.3882