Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4572 ATGATGAAAAAGATTGATCTTCTTGAGACATCAAAACGAAAACTGTTAGGAGAAGGTTTGGGGAGTTGTTCCATTGATGAACTACAAAGGATAGAGCAACAGTTGGAGAGGAGCGTAACCAAAATTCGGGTTAAAAAGACTGAGGTTTTCGGGAAACAAATTGACCATCTAAAAGAAAAGGGAAAAACCCTAGTTGCTGAAAGTACCAGACTCTCTGAGAAGTATGATAGTTATTCATCACAGCAAGCAAATAATGATGATAGAGAAAATGTAGTTGAGGTTGAAGCTTATGCAGATCAAAGTAGTCCAAATTCATACGTCGAGACTGAATTATTCATTGGTCTTCCGGATACAAGAACAAGAAGAATTTCTCCAAACTTGACGATTAATTAA 393 0.3664 MMKKIDLLETSKRKLLGEGLGSCSIDELQRIEQQLERSVTKIRVKKTEVFGKQIDHLKEKGKTLVAESTRLSEKYDSYSSQQANNDDRENVVEVEAYADQSSPNSYVETELFIGLPDTRTRRISPNLTIN* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4572 130 PANTHER MADS-BOX TRANSCRIPTION FACTOR 56 2 120 - -
Psa4g4572 130 Coils Coil 25 48 - -
Psa4g4572 130 PANTHER MADS BOX PROTEIN 2 120 - -
Psa4g4572 130 ProSiteProfiles K-box domain profile. 1 81 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g4572 130 Pfam K-box region 1 75 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4572 Psa-Chr4 407905160 407906535 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4572 1 62 MADS-box Gene Family AT2G45660 69.355 1.22e-23 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4572 - - mtr:MTR_8g033220 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4572 4 407905160 407906535 Psa4g4572 4 407905160 407906535 ECH