Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4567 ATGGGTAGAGGAAGAGTTGAATTGAAGAGGATAGAAAACAAGATAAACAGACAAGTAACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCTTATGAACTATCTGTTCTATGTGATGCTGAAGTTGCTCTCATCATTTTCTCTAGCCGTGGAAAACTCTATGAATTTGGAAGTGTTGGCACTGCCAAAACTCTTGAGAGATACCAACGCTGCTCTTTCAATCCTCAACAAGATGATCACCAAATCGACGGCGAAACTCAGAGTTGGTACCAAGAAGTGTCTAAGCTGAAAGCAAAGTATGAGTCTCTTCAAAGGACTCAGAGGCAGTTGCTTGGAGAAGATCTTGGACCTTTGAACATAAAGGAGCTGCAGAATCTTGAGAAACAGCTTGAAGGTGCTTTGGCACAAGCTAGACAAAGAAAGACACAAATTATGATCGAACAAATGGAAGAGCTTCGCAAAAGAGAACGTCATCTAGGAGACATGAACAAGCAACTAAGACTCAAGCTTGAAGGAGAAGGGTTTAATCTTAAAGCAATGGAAAGCTTGTGGAGCTCAAACTCAGTTGCTGGAAATAGCAACTTCACCTTTCAGCAGCCTCATACCAACCCTATGTCTATGACTATGGATATCCAAGCAGAACCCTTTTTGCAAATAGGATACCAACAATACTTTCAAGCTGAAGCATCCAATGCTTCAAAGAACATGGCTTGTGAGACTAACTTCATGCAAGGATTTTTCCTTTGA 750 0.4053 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTAKTLERYQRCSFNPQQDDHQIDGETQSWYQEVSKLKAKYESLQRTQRQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRKRERHLGDMNKQLRLKLEGEGFNLKAMESLWSSNSVAGNSNFTFQQPHTNPMSMTMDIQAEPFLQIGYQQYFQAEASNASKNMACETNFMQGFFL* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4567 249 PANTHER MADS BOX PROTEIN 1 234 - -
Psa4g4567 249 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g4567 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa4g4567 249 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 234 - -
Psa4g4567 249 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g4567 249 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Psa4g4567 249 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Psa4g4567 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa4g4567 249 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Psa4g4567 249 Coils Coil 121 144 - -
Psa4g4567 249 Coils Coil 94 114 - -
Psa4g4567 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa4g4567 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa4g4567 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa4g4567 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa4g4567 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4567 Psa-Chr4 407487017 407490812 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4567 1 249 MADS-box Gene Family AT2G45650 64.981 1.11e-110 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa4g4567 K-box 1.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4567 K09264 - gmx:100820061 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4567 4 407487017 407490812 Psa4g4567 4 407487017 407490812 ECH