Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4565 ATGGTGAGAGGGAAGACGCAGATGAAGCGTATAGAGAACGCAACAAGCAGACAAGTAACATTTTCAAAGAGAAGAAATGGTTTGATGAAGAAAGCTTTTGAGTTATCAATTTTGTGTGATGCTGAGGTTGCTCTTATTGTTTTCTCACCAAGAGGAAGACTTTATGAATTTGCAAGTTCAAGCATTCAAGAAACAATTGAGCGATACCGCAGTCATAGCCGGATTAATAATACTCAAACATTATCTGAATCTGCTGAAAATACTCAGCATTTGAAGGAAGAAGCAGAAAACATGATGAAAAGGATTGATCTTCTTGAAACTTCAAAACGAAAACTATTAGGAGAAGGTTTAGGGACTTGTTCCATTGAAGAATTACAAAAGATAGAACAGCAGTTGGAGAGGAGTATAACTAAAATTCGAGCAAAAAAGACTCAGGTTTTCAGGGAACAAATTGGTCATCTAAAAGAAAAGGAAAAAACCCTAATTGCTGAAAATGTCATGCTCTCTGAGAAGTATGATAAATATTCATCACAGCAAGCAAAAAAGGGTGACAGAAAAAATATAGCAGAAGGTGAAGCTTTTGCGGCAAGTTCAGATGTTGAAACTGAGTTATTCATTGGACTTCCAGAAACAAGAACAAGAATTTCTCCAAGCTTGAGGACTAATTAA 669 0.3602 MVRGKTQMKRIENATSRQVTFSKRRNGLMKKAFELSILCDAEVALIVFSPRGRLYEFASSSIQETIERYRSHSRINNTQTLSESAENTQHLKEEAENMMKRIDLLETSKRKLLGEGLGTCSIEELQKIEQQLERSITKIRAKKTQVFREQIGHLKEKEKTLIAENVMLSEKYDKYSSQQAKKGDRKNIAEGEAFAASSDVETELFIGLPETRTRISPSLRTN* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4565 222 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Psa4g4565 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa4g4565 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa4g4565 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa4g4565 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa4g4565 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa4g4565 222 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g4565 222 PANTHER MADS-BOX PROTEIN SOC1 1 210 - -
Psa4g4565 222 Gene3D - 14 100 IPR036879 GO:0003677|GO:0046983
Psa4g4565 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa4g4565 222 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g4565 222 Coils Coil 81 108 - -
Psa4g4565 222 PANTHER MADS BOX PROTEIN 1 210 - -
Psa4g4565 222 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677|GO:0046983
Psa4g4565 222 Coils Coil 122 145 - -
Psa4g4565 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4565 Psa-Chr4 406689007 406702498 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4565 1 159 MADS-box Gene Family AT2G45660 73.585 1.50e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa4g4565 K-box 2.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4565 - - mtr:MTR_8g033220 348.591