Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4560 ATGGTGAGAGGGAAGACGCAGATGAAGCGTATAGAGAACGCAACAAGCAGGCAAGTAACATTTTCAAAGAGAAGAAATGGTTTGATGAAGAAAGCTTTTGAGTTATCAATTCTGTGTGATGCTGAGGTTGCTCTTATTGTTTTCTCACCAAGAGGAAGACTCTATGAATTTGCAAGTTCAAGCATTCTAGAAACAATTGACCGTTACCGCATTCATAGCCGAGTTAATAATACTCAAACAACATCTGATTCTGTGGAAACTACTCAGGTTGCATTTGCAATAATTTCTTACACACGGAAACTGTTAGGAGAAGGTTTGGGGTCTTGTTCCATTAATGAACTACAAAAGATAGAGCAACAGTTGGATAAGAGTATAACCAAAATTCGAGCAAAAAAGGCTCAGGTTTACAGGGAACAAATAGATCAGCTAAAAGAAAAGGAAAAAGCCCTAGTAGCTGAAAATACCAGACTCTCTGAGAAGTATGATAGTTATTCATCACAGCAAGCAAAAAAGGATGACAGAAAAAATATAGCAGAAGGTGAAGCTTTTGCGGCGGATCAAAGTAGTCCAAGTTCATACGTGGAGACTGAATTATTCATTGGTCTTCCAGAAACAAGAACAAGAAGAATTTCTCCAAACTTGAGGATTAATTAA 654 0.3761 MVRGKTQMKRIENATSRQVTFSKRRNGLMKKAFELSILCDAEVALIVFSPRGRLYEFASSSILETIDRYRIHSRVNNTQTTSDSVETTQVAFAIISYTRKLLGEGLGSCSINELQKIEQQLDKSITKIRAKKAQVYREQIDQLKEKEKALVAENTRLSEKYDSYSSQQAKKDDRKNIAEGEAFAADQSSPSSYVETELFIGLPETRTRRISPNLRIN* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4560 217 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Psa4g4560 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa4g4560 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa4g4560 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa4g4560 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa4g4560 217 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Psa4g4560 217 PANTHER MADS BOX PROTEIN 1 204 - -
Psa4g4560 217 MobiDBLite consensus disorder prediction 162 192 - -
Psa4g4560 217 Pfam K-box region 97 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g4560 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa4g4560 217 MobiDBLite consensus disorder prediction 165 180 - -
Psa4g4560 217 Coils Coil 114 160 - -
Psa4g4560 217 PANTHER MADS-BOX PROTEIN SOC1 1 204 - -
Psa4g4560 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa4g4560 217 ProSiteProfiles K-box domain profile. 77 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa4g4560 217 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Psa4g4560 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4560 Psa-Chr4 406196112 406197689 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4560 1 212 MADS-box Gene Family AT4G22950 52.586 3.70e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa4g4560 K-box 2.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4560 - - mtr:MTR_8g033220 318.546