Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4559 ATGACACAAACAACAACAACCTCTTCAGAAACAACCACCACGACAACAACCTCAAACTCCTCCACCTCTTCATCTTCTTCACCACCACCACCTTCACATTCAACCCAAAAACAAACCCAGACAAAGCCCAGAGACGACGACAACAACAATAATAACAAACACCCAACCTACCATGGCGTAAGAAAACGCAGCTGGGGAAAATGGGTGTCGGAAATTCGAGAACCTCGCAAAAAATCACGAATCTGGCTCGGAACATTCTCAACACCAGAAGCTGCAGCTAGAGCACACGACGTAGCAGCTTTAACCATCAAAGGCAAAACCGCAATTCTCAATTTTCCTAATATCTCCAACATGCTTCCTATACCTGCCACGTCAGCACCACCACCACGTGACATTCAAGCCGCAGCGACAGCGGCAGCAGCTATGGTTGACTTTGATGAACCTGTCGTGCACGTGACTGAACAATGTTGTTCTGAATCTGATGAGTCTGAACAAGAACAAGAACAAGAACTTAGTCAAATTGTTGAACTTCCTAAAATTAATGAAGGTGAAGATGACTCGGTTGTTGACTCAGCTGGTTCTGAGTTTGTTTTGCTTGATGACTCGGTTGGTAGTACTAACTGGGTTTATCATCATCCTTTTACTCCCTCAATTGGTTTTGAAGATGGAATTGAATTCTATGCTACTTTTTCTGATGATTTTTTATCACCCATTTGGGATTGA 723 0.4343 MTQTTTTSSETTTTTTTSNSSTSSSSSPPPPSHSTQKQTQTKPRDDDNNNNNKHPTYHGVRKRSWGKWVSEIREPRKKSRIWLGTFSTPEAAARAHDVAALTIKGKTAILNFPNISNMLPIPATSAPPPRDIQAAATAAAAMVDFDEPVVHVTEQCCSESDESEQEQEQELSQIVELPKINEGEDDSVVDSAGSEFVLLDDSVGSTNWVYHHPFTPSIGFEDGIEFYATFSDDFLSPIWD* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4559 240 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Psa4g4559 240 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 233 - -
Psa4g4559 240 MobiDBLite consensus disorder prediction 1 62 - -
Psa4g4559 240 CDD AP2 57 114 IPR001471 GO:0003700|GO:0006355
Psa4g4559 240 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 233 - -
Psa4g4559 240 MobiDBLite consensus disorder prediction 1 38 - -
Psa4g4559 240 Pfam AP2 domain 56 105 IPR001471 GO:0003700|GO:0006355
Psa4g4559 240 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677
Psa4g4559 240 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Psa4g4559 240 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Psa4g4559 240 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Psa4g4559 240 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4559 Psa-Chr4 405697919 405698757 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4559 3 200 AP2-EREBP Transcription Factor Family AT5G11590 45.581 4.61e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa4g4559 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4559 K09286 - gmx:100801780 184.111