Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4557 ATGACTAGCCATACGGGCACATGTTTTCACAATCCTTCTCTTCTTCTAAAAATGACACAAAAAACAACCTCAAACTCCTCAGAAACAGCTACAACCTCAAATTCCTCGACCTCTTCTTCTTCATCACCCTCACCACATTCAACCTACCATGGAGTAAGGAAACGAGAGTGGGGAAAATGGGTTTCCGAAATTCGAGAACCTCGCAAAAAATCAAGAATCTGGCTCGGAACATTCTCAACACCAGAAGCTGCAGCTAGAGCACACGACGTAGCAGCTTTAACCATCAAAGGCAAAACCGCAATCCTCAATTTTCCTCATATTTCCAACATGCTTCCTAGACCTGCCACATCAGCGCCACGTGACATTCAAGCTGCGGCAACAGCAGCGGCTGCTATGGTTGACTTCGATGAACCTGTCGTGCATGTGACTCATCAATGTTGTTCTGATGAATCTGAACAAGAAGAAGAAGAAGATGAACTTGGTCAAATTGTTGAACTTCCTAAAATTAATGAAGAATGTGAAGATGATCACTCAGCTGCTGCTGAGTTTGTATTGTTTGACTGGGCTGATAGTGATTGGTTTTATCATCAAACTCCGACAAATGGGTTTGAAGGAATTGAATTCTATGCCACTTTTTCGGATGATTTTTTTGTACCTATTTGGGATTGA 669 0.423 MTSHTGTCFHNPSLLLKMTQKTTSNSSETATTSNSSTSSSSSPSPHSTYHGVRKREWGKWVSEIREPRKKSRIWLGTFSTPEAAARAHDVAALTIKGKTAILNFPHISNMLPRPATSAPRDIQAAATAAAAMVDFDEPVVHVTHQCCSDESEQEEEEDELGQIVELPKINEECEDDHSAAAEFVLFDWADSDWFYHQTPTNGFEGIEFYATFSDDFFVPIWD* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4557 222 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Psa4g4557 222 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Psa4g4557 222 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Psa4g4557 222 Pfam AP2 domain 49 97 IPR001471 GO:0003700|GO:0006355
Psa4g4557 222 MobiDBLite consensus disorder prediction 20 48 - -
Psa4g4557 222 MobiDBLite consensus disorder prediction 20 53 - -
Psa4g4557 222 SUPERFAMILY DNA-binding domain 47 106 IPR016177 GO:0003677
Psa4g4557 222 CDD AP2 49 106 IPR001471 GO:0003700|GO:0006355
Psa4g4557 222 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Psa4g4557 222 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Psa4g4557 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 215 - -
Psa4g4557 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4557 Psa-Chr4 405619065 405619753 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4557 14 190 AP2-EREBP Transcription Factor Family AT5G11590 45.128 1.41e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa4g4557 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4557 K09286 - gmx:100801780 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4557 4 405619065 405619753 Psa4g4557 4 405619065 405619753 ECH