Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4549 ATGATTCTTGTAGGAAAAAACCCTCATTTGAAGTTGCTTCAGTTTCTTCTCTTTTTAGTCTACCTTCATTTCAACAGAACCAGTTCTTATCAGATGGCACCTATGAACTGTACGGACACAAGCCGTGTTTGTACTTCTTTCTTGGCCTATAAGCCTAACAAAAACCAGTCTTTGGGAGTGATTCAGAGCATGTTTGATGTGTTGCAAGGTGACATCACAGTTGAAGGAAATAGTTGGGATTATATATTCATAAGGAAGAACTGTTCTTGTGCATCTGGTATAAAGAAATATGTGTCTAACACTACTTACACTGTGAAATCCAATGAAGGGTTTGTGGATGATTTGGTGATGGATGCATATGATGGACTTATTTTGCTTCCCAACACTTCAAGGAAAGCAAGGAATGGCGCTGTTATATCACTGAGGTTGTTTTGTGGCTGTTCTAGTGGATTGTGGAACTATTTTTTGAGTTATGTGTTGAGAGATGGAGACAGTGTTGAATCTTTGGCAAGTAGATTTGGGGTTAGTATGGGTAGTATTGAGGATGTCAATGGTCTTGATGGCCCTGATAATGTTACTGTCGGTTCACTTTATTATATTCCTCTTAATTCTGTTCCTGGTGATCCTTATCCTGTGAACAATGATGCTTCTCCGCCAGCTTCTGTTCCTACCCCTTCTGTTGATGATTTTTCAGGTGATGAGGTTAATCATAAGTATCATGTACCGTTTGGATGGATTATCGGTGGTTTAGGAGTTGGTCTTATTCTGATAATATTTGGCATCATTCTCTGTGTTTGCCTTAGATCCTCAAATTGTTTCTCTGATTCCAGAAGCCATGAAAAAGATGCTGAGCGAAAGGTCTCTCATAAATTCCAAATTCTTCGGAACCCAAGTTTTTTTTGCGGTTCCGGAAGGTACATATGTGGCAAACATGTTGACCAGAAGCAGACAGACGGTGACTCCAGCAATCACACGATTACCGTTCCAAAAGCTTCAACTCTTGGACCAGACGTATTTGACATGGATAAGCCGGTAGTTTTTGCATATGAAGAGATTTTTTCCACAACTGAAGGCTTCTCTGATTCAAATCTACTTGGACATGGAACATATGGATCTGTGTACTATAGCCTCCTCCGCGACCAGGAAGTTGCTATTAAAAGAATGACAGCTACAAAAACAAAAGAGTTTACATCAGAGGTTAAAGTTCTATGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGCTATGCAGCTAGTCATGATGAGCTTTTCCTAGTTTATGAATATGCTCAAAAGGGTTCCCTCAGAAGCCATTTGCATGATCCTCAAAATAAGGGTCATTCGCCACTTTCTTGGATCATGAGGGTCCAAATCGCGCTTGATGCTGCTAGGGGACTTGAATATATACATGAGCATACAAAAGCTCATTATGTTCACCGCGATATCAAGACGAGCAACATTTTGCTTGACGCATCCTTTAAAGCAAAAATATCAGATTTTGGATTGGCGAAACTTGTTGGGATAACAAATGAGGGAGACGTTTCTACTACGAAAGTTGTTGGTACATATGGATATCTTGCTCCCGAATACTTGACTGACGGCCTTGCAACAACCAAAAGTGATGTCTATGCATTTGGTGTTGTTGTTTTTGAGATTATAACTGGAAAGGAGGCCATTATTCGAACAGAAGGCATGATGACGAAAAATCCTGAAAGACGATCTCTGGCATCAATTATGTTGGCGGTTCTTAAGAACTCACCTGATTCCTTGAGCATGTCAAGCATGAGAGATTACATTGATCCAAATATGATGAATCTGTATCCTCATGATTGTGTATTTAAGATGGCTATGCTGGCGAAGCAATGTGTGGACGACGATCCGATCTTACGACCTGATATGAAGCAAGTAGTGATTTCCATCTCACAGATTCTACTCTCTTCTATTGAGTGGGAAGCAACACTAGCAGGAAACAGTCAAGTATTCAGTGGACTTGTTCAAGGAAGATAG 2010 0.402 MILVGKNPHLKLLQFLLFLVYLHFNRTSSYQMAPMNCTDTSRVCTSFLAYKPNKNQSLGVIQSMFDVLQGDITVEGNSWDYIFIRKNCSCASGIKKYVSNTTYTVKSNEGFVDDLVMDAYDGLILLPNTSRKARNGAVISLRLFCGCSSGLWNYFLSYVLRDGDSVESLASRFGVSMGSIEDVNGLDGPDNVTVGSLYYIPLNSVPGDPYPVNNDASPPASVPTPSVDDFSGDEVNHKYHVPFGWIIGGLGVGLILIIFGIILCVCLRSSNCFSDSRSHEKDAERKVSHKFQILRNPSFFCGSGRYICGKHVDQKQTDGDSSNHTITVPKASTLGPDVFDMDKPVVFAYEEIFSTTEGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFTSEVKVLCKVHHANLVELIGYAASHDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKAHYVHRDIKTSNILLDASFKAKISDFGLAKLVGITNEGDVSTTKVVGTYGYLAPEYLTDGLATTKSDVYAFGVVVFEIITGKEAIIRTEGMMTKNPERRSLASIMLAVLKNSPDSLSMSSMRDYIDPNMMNLYPHDCVFKMAMLAKQCVDDDPILRPDMKQVVISISQILLSSIEWEATLAGNSQVFSGLVQGR* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4549 669 SMART LysM_2 157 201 IPR018392 -
Psa4g4549 669 PANTHER BNAA06G02020D PROTEIN 35 669 - -
Psa4g4549 669 CDD LysM 157 200 IPR018392 -
Psa4g4549 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Psa4g4549 669 Gene3D LysM domain 153 207 IPR036779 -
Psa4g4549 669 ProSiteProfiles LysM domain profile. 156 200 IPR018392 -
Psa4g4549 669 SMART serkin_6 359 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4549 669 ProSitePatterns Protein kinases ATP-binding region signature. 365 386 IPR017441 GO:0005524
Psa4g4549 669 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 35 669 IPR044812 GO:0019199|GO:0045087
Psa4g4549 669 Gene3D Transferase(Phosphotransferase) domain 1 432 655 - -
Psa4g4549 669 Gene3D Phosphorylase Kinase; domain 1 335 430 - -
Psa4g4549 669 SUPERFAMILY Protein kinase-like (PK-like) 338 639 IPR011009 -
Psa4g4549 669 SUPERFAMILY LysM domain 156 201 IPR036779 -
Psa4g4549 669 Pfam Protein tyrosine and serine/threonine kinase 363 638 IPR001245 GO:0004672|GO:0006468
Psa4g4549 669 Pfam LysM domain 158 195 IPR018392 -
Psa4g4549 669 ProSiteProfiles Protein kinase domain profile. 359 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4549 Psa-Chr4 405245914 405251946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4549 34 669 Receptor kinase-like Gene Family AT1G51940 67.030 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Psa4g4549 PK_Tyr_Ser-Thr 4.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4549 - - gmx:100796989 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4549 4 405245914 405251946 Psa4g4549 4 405245914 405251946 ECH