Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4547 ATGTGGCAAAGAAGCATGAAATTGGAGCTTAAACTTGGTCCACCAGGTGAAGAAGAGTGTGTCAATGAAGAAAGTATGAAGAATGTTAAAAAAGAAAGAGATGAAGATGAAAAAAATGAAGAATCATCACTCACTCTTGGTTACTTTGCAAAGAAAGATTCAACTTGTGATTTCTCTAATGTTAAAGGTTCTTCATTTCTTCAACTCTCATCAATGCAAGGGATGGAAAAAGATGCATCACAAGGTGAGAAGAATGCATTCTCACCTTCTACAAAAAAATCAGATTTTTCTAATAGGTCTCAGAAAAGAAATTCAACTAGTAGAGCAGTTGGTTGGCCGCCGATTCGATCTTTCCGGAAGAACATTGCAAGCGGAAGCTCGTCTAAACCGCCCACCGAGCCGCGGCATGTGGTTCAAGACAAGGTTGCTGCCAGTAACAAACCTATTAGAAACTCTAGAAAAGGCTTATTTGTGAAGATCAACATGGATGGAGTTCCTATTGGAAGAAAAGTAGACATCAATGCTTATGACAGCTATGAAAAACTTTCATCTGCTGTAGATGACCTATTCAAAAGTCTCATTGAAGAGATAAATTTATCACATATTGTGTTTTCACACTGCTGTTCTGCTCAAAGAGATTCTTCATGTGATGATGGAATTGACAAGAAGCAAGAGGAAGAAAATAAAGATATGATGAAAGGTTCATTGATTGGAAGTGGAGAATATAGTCTTGTTTATGAAGATAATGAAGGTGACAAGATGCTTGTAGGGGATGTGCCATGGGAGTAA 789 0.3777 MWQRSMKLELKLGPPGEEECVNEESMKNVKKERDEDEKNEESSLTLGYFAKKDSTCDFSNVKGSSFLQLSSMQGMEKDASQGEKNAFSPSTKKSDFSNRSQKRNSTSRAVGWPPIRSFRKNIASGSSSKPPTEPRHVVQDKVAASNKPIRNSRKGLFVKINMDGVPIGRKVDINAYDSYEKLSSAVDDLFKSLIEEINLSHIVFSHCCSAQRDSSCDDGIDKKQEEENKDMMKGSLIGSGEYSLVYEDNEGDKMLVGDVPWE* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4547 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 262 IPR003311 GO:0005634|GO:0006355
Psa4g4547 262 ProSiteProfiles PB1 domain profile. 155 262 IPR000270 GO:0005515
Psa4g4547 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 262 - -
Psa4g4547 262 Pfam AUX/IAA family 8 262 IPR033389 -
Psa4g4547 262 SUPERFAMILY CAD & PB1 domains 151 262 - -
Psa4g4547 262 MobiDBLite consensus disorder prediction 11 42 - -
Psa4g4547 262 MobiDBLite consensus disorder prediction 72 111 - -
Psa4g4547 262 Gene3D - 150 262 - -
Psa4g4547 262 MobiDBLite consensus disorder prediction 1 44 - -
Psa4g4547 262 MobiDBLite consensus disorder prediction 72 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4547 Psa-Chr4 405148997 405150992 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa4g4547 AUX_IAA 3.8e-54 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4547 K14484 - gmx:100793822 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4547 4 405148997 405150992 Psa5g6793 5 562469791 562472790 ECH
Psa4g4547 4 405148997 405150992 Psa4g4547 4 405148997 405150992 ECH
Psa5g6793 5 562469791 562472790 Psa4g4547 4 405148997 405150992 PCT