Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4543 ATGGGAAGAAGACCGGCGAGATGTTACCGTCAGATAAAGAACAAACCGTATCCAAAATCGCGCTTCTGCCGTGGCATTCCCGATCCAAAGATCCGAATCTACGACGTAGGGATGAAGAAAAAGGGCGTAGACGAGTTTCCTTTCTGCGTTCATCTAGTATCATGGGAGAAAGAAAATGTCTCCAGCGAAGCATTAGAGGCAGCGAGAATCGCCTGCAACAAGTACATGTCGAAGTTTGCTGGAAAAGACGCGTTTCATTTGCGTGTTAGGGTTCATCCTTTTCATGTGTTGAGAATTAACAAGATGCTATCGTGCGCTGGGGCGGATAGGTTGCAGACCGGGATGAGAGGCGCGTTTGGGAAGCCGTTGGGGACGTGTGCTAGGGTGAGTATTGGACAGGTGCTGTTGTCTGTTAGGTGTAAGAGTGGGAATGGTCAGCATGCTCAAGAGGCTCTTCGTCGGGCTAAGTTCAAGTTCCCCGGTCGTCAGAAAATTATTGTTAGTAGAAAGTGGTAA 516 0.4864 MGRRPARCYRQIKNKPYPKSRFCRGIPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVSIGQVLLSVRCKSGNGQHAQEALRRAKFKFPGRQKIIVSRKW* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4543 171 PANTHER 60S RIBOSOMAL PROTEIN L10 1 171 IPR001197 GO:0003735|GO:0005840|GO:0006412
Psa4g4543 171 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Psa4g4543 171 PIRSF RPL10a_RPL10e 1 171 IPR001197 GO:0003735|GO:0005840|GO:0006412
Psa4g4543 171 Gene3D Ribosomal protein L10e/L16 1 171 IPR036920 GO:0003735|GO:0005840|GO:0006412
Psa4g4543 171 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Psa4g4543 171 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Psa4g4543 171 SUPERFAMILY Ribosomal protein L16p/L10e 4 171 IPR036920 GO:0003735|GO:0005840|GO:0006412
Psa4g4543 171 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 171 IPR001197 GO:0003735|GO:0005840|GO:0006412
Psa4g4543 171 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4543 Psa-Chr4 405093336 405093949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4543 1 171 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 92.398 2.48e-118 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4543 K02866 - han:110869666 347.821