Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4542 ATGGGAAAAGCTAGTAGATGGTTGAAGAATTTGTTAGGAATGAAGAAGGAAAAAGAGAAAGAAAAGGAACATATTGATGTTAATTCAGGTTCATTGACACCGAATAACAGTAAGAAAGAGAAGAAAAGATGGAGTTTTGGAAAGCAAGGGAAGAGTTTAGATTCTAACATTACTCCAACTTCTGATTCTGATTCTGCTTGGTTTAGATCCTACATGGCTGATACTGAGAATCAACAGAACAAACATGCAATTGCTGTTGCAGCTGCTACGGCCGCCGCTGCGGATGCAGCGGTGGCCGCCGCGCAGGCTGCCGTGGCGGTTGTGAGGCTGACGAGTCAAGGGAGAGGTACATTGTTTAGTGGAAGTAGAGAGAAATGGGGTGCTGTAAAGATCCAAACTTTCTTCAGAGGCTATTTGGCAAGGAAAGCTCTTAGAGCATTGAAAGGTTTGGTTAAGATTCAAGCTCTTGTTAGAGGCTATCTTGTTAGAAAAAGAGCTGCTGCAACACTTCATAGTATGCAAGCTTTAATTCGAGCTCAAAATTCGGTCAGAACGCAAAGAGCGCGTCGATCCATGAGCAAAGAAAATCGGTTTCTGTCTGAAAATCTTGCAAGAAAATCTCTGGAACGATATGATGAAACAAGGAGTGAATTCCACAGCAAAAGACTACCAACATCATCTTATGAAACACCATTGAATGGATTCGATGAAAGTCCAAAGATTGTCGAAATCGACACATACAAAACCAAGTCAAAATCTAGAAGATTCACCTCAACAATGTCCGAATACGGAGAAGAATTACCTCCATGTCATGCCACAATTTCATCACCTCTTCCAACCAGAATCTCAGTTCCCGATCATCGAAACCATCAACAACAGCAAGACTTTGATTGGTATTTCAACAATCTCGAAGAGTGCCGTTACCCGACAACACATAACACGCCCCGTTTCAACCATTCGTCGTCAACGCTTCCTCCAAATACACCATCGAAAAGTGTTTGTGGTGGCGAAAGCACTTTCTATAGACCTTATTACTACTCAAATTTTCCGAATTACATGGCGAATACTCAGTCGTTTAAGGCAAAGTTAAGGTCTCATAGTGCTCCTAAACAAAGACCAGAGGTTAAGAAAAGGCTCTCACTCAATGAAATGATGGCTGCAAGAAACAGTTTAAGTAGTGTTAGAATGCAAAAGCCACAATCATCCAATTTACAGACACAACAAGAAGAAGAATCTTGGAATTTTTGA 1248 0.4127 MGKASRWLKNLLGMKKEKEKEKEHIDVNSGSLTPNNSKKEKKRWSFGKQGKSLDSNITPTSDSDSAWFRSYMADTENQQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGTLFSGSREKWGAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQNSVRTQRARRSMSKENRFLSENLARKSLERYDETRSEFHSKRLPTSSYETPLNGFDESPKIVEIDTYKTKSKSRRFTSTMSEYGEELPPCHATISSPLPTRISVPDHRNHQQQQDFDWYFNNLEECRYPTTHNTPRFNHSSSTLPPNTPSKSVCGGESTFYRPYYYSNFPNYMANTQSFKAKLRSHSAPKQRPEVKKRLSLNEMMAARNSLSSVRMQKPQSSNLQTQQEEESWNF* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4542 415 MobiDBLite consensus disorder prediction 14 58 - -
Psa4g4542 415 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 401 - -
Psa4g4542 415 SMART iq_5 146 167 IPR000048 GO:0005515
Psa4g4542 415 SMART iq_5 123 145 IPR000048 GO:0005515
Psa4g4542 415 Gene3D - 127 166 - -
Psa4g4542 415 ProSiteProfiles IQ motif profile. 124 152 IPR000048 GO:0005515
Psa4g4542 415 MobiDBLite consensus disorder prediction 386 415 - -
Psa4g4542 415 Pfam Protein of unknown function (DUF4005) 314 408 IPR025064 -
Psa4g4542 415 ProSiteProfiles IQ motif profile. 148 175 IPR000048 GO:0005515
Psa4g4542 415 PANTHER IQ-DOMAIN 5-RELATED 1 401 - -
Psa4g4542 415 Pfam IQ calmodulin-binding motif 127 145 IPR000048 GO:0005515
Psa4g4542 415 Pfam IQ calmodulin-binding motif 151 165 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4542 Psa-Chr4 405062707 405066336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4542 1 396 IQD Protein Family AT3G16490 53.563 1.18e-104 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4542 - - gmx:100797686 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4542 4 405062707 405066336 Psa4g4542 4 405062707 405066336 ECH
Psa5g6792 5 562304896 562306679 Psa4g4542 4 405062707 405066336 PCT