Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4516 ATGGCGGCACCGGGAGGCGGGATGTTAGACGGCGGAGTCCCAATGGCGCAACCACCAGGAACAGACATGACCGGGATATGCTTCAGAGACCAGTTATGGCTAAACACTTACCCTCTCGATCGCAACCTCGTCTTCGATTACTTCGCTTTATCACCGTTCTACGACTGGACTTGCAACAACGAACAAATTCGAATGCGATCTCTTCACCCACTCGATCCCTCTCAACTCACGAAAATGACGGGTATAGAGTATGTGCTGAGTGAAGTTATGGAACCTCACCTTTTCATTATTCGGAAACAGAAGAGAGATAGCCCTGATAAAGTTACTCCAATGCTTGCTTATTACATCTTGGATGGTTCTATTTATCAATCTCCACAGTTGTCCAATGTTTTTGCTGCTCGAGTTGGAAGGGCACTTTATTATATTCAAAAGGCATTTACTACAGCTGCCTCTAAGTTGGAGAAGATAGGATATGTTGATTCTGAAAAGGAGACTACATTGCCAGAACCGAAGGCAGCTAAGGAGACAATTGACTTAAAAGAAATTAAACGAGTGGATCATATTCTTGCATCTTTGCAACGCAAGCTTCCGCCAGCTCCACCTCCACCACCATTTCCAGAAGGGTATGTTCCGCCTTCAACAGCAGAAACTGAGAAAGGCCCTGAAACTCAGGAAGCAACTGAGTCGCAAGCACCTACAGTTGATCCGATAATTGATCAAGGACCTGCAAAAAGAATGAAATTTTGA 747 0.4498 MAAPGGGMLDGGVPMAQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQIRMRSLHPLDPSQLTKMTGIEYVLSEVMEPHLFIIRKQKRDSPDKVTPMLAYYILDGSIYQSPQLSNVFAARVGRALYYIQKAFTTAASKLEKIGYVDSEKETTLPEPKAAKETIDLKEIKRVDHILASLQRKLPPAPPPPPFPEGYVPPSTAETEKGPETQEATESQAPTVDPIIDQGPAKRMKF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4516 248 MobiDBLite consensus disorder prediction 195 210 - -
Psa4g4516 248 MobiDBLite consensus disorder prediction 217 234 - -
Psa4g4516 248 Gene3D Mediator complex, subunit Med6 20 149 IPR038566 -
Psa4g4516 248 Pfam MED6 mediator sub complex component 26 151 IPR007018 GO:0003712|GO:0006357|GO:0016592
Psa4g4516 248 MobiDBLite consensus disorder prediction 191 248 - -
Psa4g4516 248 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6 10 248 - -
Psa4g4516 248 PIRSF MED6_meta/plant 12 248 IPR016820 GO:0003712|GO:0006357|GO:0016592
Psa4g4516 248 PANTHER MED-6-RELATED 10 248 IPR007018 GO:0003712|GO:0006357|GO:0016592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Psa4g4516 Med6 2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4516 K15128 - gmx:100792248 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4516 4 402516210 402519742 Psa4g4516 4 402516210 402519742 ECH