Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4509 ATGGATGATCTGAATTGGGGTGGCTCAGAAGTTATGCAAGAGAGGGCGCGAATCTTGTGGAATACTCAGCAGCAACAAAACTTTGAAGGATGCTACAACATAACAAACTCTCTTACTCATGAAATACAAGAGATGCATAATGTTGAAATTGATCATAGTGCAAATTCAAATTCTGAAAGAGTGATGATGATTCCAAATAAAACTCTGTTACAGCATGCAACAACCATGACAGTGAAATCAAAAGCTGGATCCAGCTGGGAAGAGCCTTCAATGCATCAATCAGATCAATCCCTTTTGGTCAATAGACCTTACAACATGCCAGATTTCAACTTGGCCCACCAACAACAACAACAACTCAATTTTAACAACTCTTTTGATTGTTTGCTTTCAGATACTAATAGCAACACAGACACTTCTATTGAAAATGATGATGATGGTGGAATTTCAAGGTTGTTTTCTGACTGCAGACATTTATGGAGCTTCAGTTATGTCAATCCTACATCCTCATCCGATGATAGTAATGTTTCAAACTATGAAGCACCCACACAAACAAAGGTATCAAACAAACCTTCAATCAGAAGTGTTGGTTTAAATGGTACAAGTTACGAAGCATTCGGACAGACACGTGCACCAGACACACGTTCAATCAGAAGTGTTGGTTCAAATGGTATAAGTTATAAAACACAGAAACAGACACCAGATACATCTTTGATCAGACGCGTTGGTAAGAAAGACATGCAATGTCCATTCAATGTTGAACTTGACGAAACGGTGTCTCAAAGCTCATCAGATCAATACATCACTCAAAGAAAAACAATAAATTCAAGTACTATTCATAATTCTTCATCTCTTGAAGGTGGTTTTAGCCTTATCACTGATAAGCCACCAACAAACAAGAAACCAAGATCTGACAAAGCACCTTGTTCAACCAACATAAATTTCCAACAACCAAATTCATCGTCATCATCATCAATATGCTGTTCATCTTCAACCGAAGAGCCTGATCGAGAAGCAATAGCGCAAATGAAGGAAATGATGTATAGAGCTGCAGCATTTAGGCCAGTGAATTTCGGAATCGACGACATCGATGTGATTGAAAAAAAGCCTAAGAGAAAGAATGTTAAGATATCAAACGATCCACAAACTGTGGCTGCAAGACAAAGAAGGGAAAAAATAAGTGATAGGATTAGGGCTTTGCAAAAGATTGTACCTGGTGGAAACAAAATGGACACTGCTTCAATGCTTGATGAGGCTGCAAATTATCTCAAGTTTTTAAGGTCACAAATTAAAGCACTTGAAAGTTTAGGTAACAAAGTTAATACTATGGATTGTAATCATCCATCTAGTATTGCTTTCTCTTTTAATCCTTCTTTTTCCATGCAAATGATTCCTAATCATTTCAATTATGATGATCATCTCTAA 1422 0.3713 MDDLNWGGSEVMQERARILWNTQQQQNFEGCYNITNSLTHEIQEMHNVEIDHSANSNSERVMMIPNKTLLQHATTMTVKSKAGSSWEEPSMHQSDQSLLVNRPYNMPDFNLAHQQQQQLNFNNSFDCLLSDTNSNTDTSIENDDDGGISRLFSDCRHLWSFSYVNPTSSSDDSNVSNYEAPTQTKVSNKPSIRSVGLNGTSYEAFGQTRAPDTRSIRSVGSNGISYKTQKQTPDTSLIRRVGKKDMQCPFNVELDETVSQSSSDQYITQRKTINSSTIHNSSSLEGGFSLITDKPPTNKKPRSDKAPCSTNINFQQPNSSSSSSICCSSSTEEPDREAIAQMKEMMYRAAAFRPVNFGIDDIDVIEKKPKRKNVKISNDPQTVAARQRREKISDRIRALQKIVPGGNKMDTASMLDEAANYLKFLRSQIKALESLGNKVNTMDCNHPSSIAFSFNPSFSMQMIPNHFNYDDHL* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4509 473 SMART finulus 382 431 IPR011598 GO:0046983
Psa4g4509 473 MobiDBLite consensus disorder prediction 296 332 - -
Psa4g4509 473 Coils Coil 415 435 - -
Psa4g4509 473 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 464 IPR045843 GO:0003700|GO:0006355
Psa4g4509 473 Pfam Helix-loop-helix DNA-binding domain 386 425 IPR011598 GO:0046983
Psa4g4509 473 CDD bHLH_AtIND_like 377 435 - -
Psa4g4509 473 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 382 435 IPR036638 GO:0046983
Psa4g4509 473 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 376 425 IPR011598 GO:0046983
Psa4g4509 473 Gene3D - 381 444 IPR036638 GO:0046983
Psa4g4509 473 PANTHER TRANSCRIPTION FACTOR BHLH87 1 464 - -
Psa4g4509 473 MobiDBLite consensus disorder prediction 303 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4509 Psa-Chr4 402305001 402307161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4509 283 469 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 57.292 1.89e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g4509 HLH 3.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4509 - - vra:106773034 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4509 4 402305001 402307161 Psa4g4509 4 402305001 402307161 ECH
Psa5g6771 5 561560554 561562550 Psa4g4509 4 402305001 402307161 PCT