Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4506 ATGGATTATTATGGAGGAAAGATTGGTGGAAGTGATCAAAGAGGTGGTAGTGGTGGTGGGCCATGTGGTGCTTGCAAGTTTTTGAGAAGAAAGTGTGTAAAAGGTTGCATATTTGCACCCTATTTTGATTCAGACCAAGGAACGGTTCATTTTGCAGCTGTTCATAAGGTGTTTGGTGCTAGCAATGCCTCTAAGTTACTCATGCGTATTCCAGTTCATAAACGTCTTGATGCTGTTGTTACTCTTTGTTATGAAGCTCTTGCTAGGGCTAGAGATCCTGTTTATGGTTGTGTTGCTCATATCTTTGCACTTCAACAACAGGTCATGAGCTTGCAAGCAGAGTTAACCTATGTTCAGGCAACCCTTGCGACAATGCAGTGCGTTCCGATCTCGCCATCTCCATCTCTTCGAAACCCTCAAAACTCTTCGCCGACTCCACATTCTTCCTCGGATCACTTAGGAACGAATGCAGACATGTTGAGTGCCTCTAATTACATGTCCATGCACATTGATCCTCATCAACCACTTTCAGCATCATTGGACTTGAGTAGCTTCTTCAATCAATCAGATCAACAACAACTTGAGGATGATGAACTCCAAGCTTTGGCTAGAGAATTTGTCTCTAGGTACTTGCCTGGAGTGAGATTTCAGCCTTCTAATTCTAACTAA 669 0.4305 MDYYGGKIGGSDQRGGSGGGPCGACKFLRRKCVKGCIFAPYFDSDQGTVHFAAVHKVFGASNASKLLMRIPVHKRLDAVVTLCYEALARARDPVYGCVAHIFALQQQVMSLQAELTYVQATLATMQCVPISPSPSLRNPQNSSPTPHSSSDHLGTNADMLSASNYMSMHIDPHQPLSASLDLSSFFNQSDQQQLEDDELQALAREFVSRYLPGVRFQPSNSN* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4506 222 Pfam Lateral organ boundaries (LOB) domain 21 119 IPR004883 -
Psa4g4506 222 ProSiteProfiles LOB domain profile. 20 122 IPR004883 -
Psa4g4506 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 15 213 - -
Psa4g4506 222 PANTHER LOB DOMAIN CONTAINING PROTEIN 15 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4506 Psa-Chr4 401817679 401822101 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4506 19 220 AS2 family AT4G00210 56.221 1.34e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa4g4506 LOB 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4506 - - gmx:100791377 301.982