Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4502 ATGGTGCTGCAGCTGCAGAAATATCCCAAGAAAGCGAGGTTCAAGAAGTTGTCTTTGCAGCATGTGATGCTGCTGATGGAAGATGGGCAAAAGCTTCTGGGGGTCCGTGTTGTTCTCCATCCTAGATTGAAACTGCAGGAGTTTCTAACTATTTACAACACCACCCATGAGTTCATTACAGTTACTAAAACAAGTTGGCTTAAGCCGAAACCTGTTTCAAAGACAAATAATGAACCGACACGAAAGGTTTCGGGATTTGATCAAGAGTTGGTGGAGACTTTGCGGAATCACTTAGACTCCATGCAACTGCCAGACTCTATCCGGTGGCGTATCCAAGCGAAAGCGGCTATTCTAGCCGAGAAGTTCGCACCAGATCTTTCATGGTATGTTGACGTGATTTTTCAACTAATTGACAAGGCTGGGGATTTTGTTAGTGATGACATTTGGTTTCGAGTGGTACAGTTTGTTACAAACAACGAAGACCTACAACCTTATGCTGCAGCAAAAGCTCGAGAGTATCTTGACAAACCTGTCATACATGAGACAATGCAAATCGTTTACAAGGCAATTGATGTGAAAGAAGATAAGGATGTCGAGATCTTGGAATTTCCTGAGCAGGAGTTCAAGTTGGAGCATCTCTCAAGGAGATGCATGAGCTCTATGTATTTCCAACAGGTGAAAACAGATTTTGAGATGGCTCTGAATCCATCCCGGGTCACAGGAAGTATGTTACCAGATAGCCCTCAAGAAGCAGGTGGACCCGTGAACCAGATTGAACAACTGAACGCTTCAGACCTAGAGGAGTTTAGACGGCGTGACTTAGTAAATGCTGCTCAGCGTGCACGCAAAATAGCTAATCTCTGCCCTACAAAGTCTCATACTTCTACTTACATAATGGGTACAATTGGCTACATAGACCCCGAATATGCCCGAACTTCCCGTCTAACTGAGAAATCCGATGTCTACAGCTATGGCATTGTTTTACTTGAACTGCTAACCGGTAGAAAAGCCGTTGACAATGAATCCAACCTCCATCATCTAACTTTGTCCAAGACAGCTAGCAATGCAGTAATGGAAACGGTTGATCCCGACATAACTGCCACATGCAAGGATCTTCTTTCTTTCTGTTTCCCTGGAGGCTTGGAGGTTCGAGCTGTTGAGAGAACCATTCAAGGAAGAGATGAAGCGGTTTACGGCGAAGACTGTGGATTTTCTTCAACAAGAGCAGTTGATGATGAAGTTCTTAGAGATTTGGAGCAAATGGAGAAAGAATCGGATCTAGATGATATCTTGAATTATCGATCATCTGCAGAATTTGAGATGCAAGAGTCTCTCTCTAGGTATTCTACTCATAACCATGGAAGGATTCTCCCTGATATTACTACAGAAAAGCCAGGAAGTGATGAGCACAATGTTAAAGCCAGCGTTGATGTTGTTACAAAGCATGAGTTGTGCATATTTGAATCAAAGATTGAAATTCATCAGATTTCCACAACTCTATTTACCAAGAAACATATCCAAACCGGAACCAAGGTTTTCATTGTCTTTATTCCTTTGACAGTAATCAGCATATGCTATCAGAAATATTGTATTCCATCAGGCCGGGAACTATCTCGTTTACTCGGAGTATGCGAAGCTCCTGTCATTCAGCACTTAGCCGAAACCATTTCAGGTTTTATCAGCATGTTTCATGTCATTTGCTCATGGTGGAAATGA 1716 0.4266 MVLQLQKYPKKARFKKLSLQHVMLLMEDGQKLLGVRVVLHPRLKLQEFLTIYNTTHEFITVTKTSWLKPKPVSKTNNEPTRKVSGFDQELVETLRNHLDSMQLPDSIRWRIQAKAAILAEKFAPDLSWYVDVIFQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPVIHETMQIVYKAIDVKEDKDVEILEFPEQEFKLEHLSRRCMSSMYFQQVKTDFEMALNPSRVTGSMLPDSPQEAGGPVNQIEQLNASDLEEFRRRDLVNAAQRARKIANLCPTKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLTLSKTASNAVMETVDPDITATCKDLLSFCFPGGLEVRAVERTIQGRDEAVYGEDCGFSSTRAVDDEVLRDLEQMEKESDLDDILNYRSSAEFEMQESLSRYSTHNHGRILPDITTEKPGSDEHNVKASVDVVTKHELCIFESKIEIHQISTTLFTKKHIQTGTKVFIVFIPLTVISICYQKYCIPSGRELSRLLGVCEAPVIQHLAETISGFISMFHVICSWWK* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4502 571 SUPERFAMILY Protein kinase-like (PK-like) 289 378 IPR011009 -
Psa4g4502 571 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 286 372 - -
Psa4g4502 571 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 286 372 - -
Psa4g4502 571 Gene3D - 88 241 IPR011989 -
Psa4g4502 571 Pfam Adaptin N terminal region 89 183 IPR002553 GO:0006886|GO:0016192|GO:0030117
Psa4g4502 571 Pfam Protein kinase domain 294 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4502 571 Gene3D Transferase(Phosphotransferase) domain 1 275 383 - -
Psa4g4502 571 SUPERFAMILY ARM repeat 87 190 IPR016024 -
Psa4g4502 571 ProSiteProfiles Protein kinase domain profile. 1 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4502 Psa-Chr4 401726494 401730619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4502 290 372 Receptor kinase-like Gene Family AT5G62230 73.494 1.92e-34 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Psa4g4502 Pkinase 2.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4502 K20718 - lang:109358946 169.088