Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4497 ATGAGTATAAACTCTAGTTGCAGCGGTAGCGGTGGTGGTTGTAGTGGTGGTGGAAGTGGTGGAAATGGTGGTGTTTGTGGTCCTTGCGGTGCGTGCAAGTTTTTGAGGAGGAAGTGTATTCCGGGTTGTATCTTTGCGCCTTACTTCGATTCGGAGCACGGCGCTTCACATTTCGCGGCCGTTCATAAGGTTTTTGGTGCTAGCAATGTTTCGAAGCTGTTGCAAAATGTTCCGGTGCACAAACGTTTTGATGCAGTTATCACCATTTGTTATGAAGCTCAAGCAAGGTTGAGAGATCCTGTTTATGGTTGTGTTGCTCATATCTTTACCCTTCAGCAACAGGTGATGAGTTTACAAGCAGAACTCTCCTACTTACAAGGTCACCTAGCTACATATGAAGTCCCTCAACCACCAACACCTTCTCCACCACAAGCATTTCCAATGGTCTCTTCTTCATCCATTCCACCCACATATGACTTGTCTTCACTCTTTGATCCTATGGCACAAACTTCTGCATGGGCCATGCATCAAAGGCCTAATGAGCCTCGTCAATATTTGGGTAGTGGCACATCAACACCAAGTAGCAATAATGGTGGGGATCTTCAAGTATTGGCAAGAGAGCTTTTGCATAGATATGGATCTGCTCCATCCTCTCGTTCTCTTTCCAAATGA 672 0.4568 MSINSSCSGSGGGCSGGGSGGNGGVCGPCGACKFLRRKCIPGCIFAPYFDSEHGASHFAAVHKVFGASNVSKLLQNVPVHKRFDAVITICYEAQARLRDPVYGCVAHIFTLQQQVMSLQAELSYLQGHLATYEVPQPPTPSPPQAFPMVSSSSIPPTYDLSSLFDPMAQTSAWAMHQRPNEPRQYLGSGTSTPSSNNGGDLQVLARELLHRYGSAPSSRSLSK* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4497 223 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 213 - -
Psa4g4497 223 MobiDBLite consensus disorder prediction 174 223 - -
Psa4g4497 223 Pfam Lateral organ boundaries (LOB) domain 28 126 IPR004883 -
Psa4g4497 223 ProSiteProfiles LOB domain profile. 27 129 IPR004883 -
Psa4g4497 223 MobiDBLite consensus disorder prediction 174 201 - -
Psa4g4497 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4497 Psa-Chr4 400308281 400310608 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4497 31 210 AS2 family AT4G00220 62.827 1.56e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa4g4497 LOB 1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4497 K21994 - gmx:100798425 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2675 3 223811443 223814474 Psa4g4497 4 400308281 400310608 PCT