Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4488 ATGAGTATTGTGTATAGTCATGCCCAAAACTATTCTCAAGTTGAGTCAAGCCTTGTTGATACAACCATTGGTTTTTTCAATCAAGAAACTTTCAGAAACCATAATCATCAATACTATTCTCCCTCCACAAGTTCAGAAATGGAAACAATGTTTACCAACTCTCAACATGTGGCAGTGAAACAAGAAGAAAATGAACCTTTTTCATCACACTACAATGGTTACTCTTCTTATGCATCACCTTTAAATCCGATGATTTACCAAACTCAGCAGAATCAAGGATTGCCTAATGACTTTGATGCTTCATTTAGTGCTGTGAGTTCTTTCGATTCGGAGAATTATATCTCCGAAACTAACATTGATTCTTCTACTAAGAATTGCTTCAATCTCATTAGGCACAAGAGTTCCCCTCCTGAGTTTTTCTCCAATTATTCACTTCATAATGCTTCTATGAATTTCTCATCTACACAAATTATTGAAAGTGATGAACATGAAGCTATTCAACCAGATTGTATTACAAGTAAAAACATTAGAAAATGTTACATGCCTAGCTTCACTACTGACTGTTGGGATAATTCTACATTCAATGTCCCAAAAACATCCACTATCAATGGTGAAATCATCTTTTCTACTTCAAATGCTTTGCAAACTCAGGAATTAGATTTTGGATACCAAAAACTTGGTTTGAGCCACCATTTGAGTCTGCCAAGCTCTTCTACAAAGATGACTAGGATGGACAAGTTTTTTCACATTCAAGGATCTGTTCCATGCAAAATTCGCGCCAAAAGAGGTTTTGCCACTCATCCAAGAAGCATTGCAGAGAGGGAAAGAAGAATAAGAATTAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAATTCAGATAAGCAAAGTAGCACAGCTGATATGTTGGATGTAGCAGTTGATTACATTAAAGACCTTAGGAAACAACTTAAGATATTATCAGACACTAAGGCAAAGTGCAGTTGTACAAGTAATTAG 1002 0.3573 MSIVYSHAQNYSQVESSLVDTTIGFFNQETFRNHNHQYYSPSTSSEMETMFTNSQHVAVKQEENEPFSSHYNGYSSYASPLNPMIYQTQQNQGLPNDFDASFSAVSSFDSENYISETNIDSSTKNCFNLIRHKSSPPEFFSNYSLHNASMNFSSTQIIESDEHEAIQPDCITSKNIRKCYMPSFTTDCWDNSTFNVPKTSTINGEIIFSTSNALQTQELDFGYQKLGLSHHLSLPSSSTKMTRMDKFFHIQGSVPCKIRAKRGFATHPRSIAERERRIRISARIKKLQDLFPNSDKQSSTADMLDVAVDYIKDLRKQLKILSDTKAKCSCTSN* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4488 333 Pfam Helix-loop-helix DNA-binding domain 270 314 IPR011598 GO:0046983
Psa4g4488 333 SMART finulus 270 320 IPR011598 GO:0046983
Psa4g4488 333 Gene3D - 266 332 IPR036638 GO:0046983
Psa4g4488 333 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 18 148 - -
Psa4g4488 333 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 148 332 - -
Psa4g4488 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 314 IPR011598 GO:0046983
Psa4g4488 333 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 148 332 - -
Psa4g4488 333 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 18 148 - -
Psa4g4488 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 328 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4488 Psa-Chr4 398314554 398316709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4488 128 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 40.278 5.14e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g4488 HLH 6.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4488 - - cam:101493473 374.015