Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4483 ATGTCGACAGTACCAGGGCCACTCGTATGGGAGATCGTGAAGAAGAACAACTCGTTTTTGGTCAAAGAGTTCGGAAATGGCAATCAGAGTGTTCAATTCAGCAGAGAGAGCAACAATCTCTACAACCTCAACTCTTTCAAGTACTCCGGATTGGCAAACAAGAAAACCGTTGCCATCCAGGCTGCTGGTAAAGATCAATCTGTGTTGTTAGCTACAACAAAGCCAAGGAAACAGAATACGCCTTCTGTTTTGTCTCAGAAATCAGTCATGAAGAAGGAGTTCCGCAGAATGGCAAAGGCTGTTCAAAATCAGGTGGGAGACAATTACTATAGGCCTGATTTGAAGAAGGCAGCTCTTGCAAGGTTGAGTGCTGTTCATAGAAGCCTCAAAGTTGCCAAGTCTGGCCTCAAGAAGAGGAATAGGCACGCATAA 432 0.4491 MSTVPGPLVWEIVKKNNSFLVKEFGNGNQSVQFSRESNNLYNLNSFKYSGLANKKTVAIQAAGKDQSVLLATTKPRKQNTPSVLSQKSVMKKEFRRMAKAVQNQVGDNYYRPDLKKAALARLSAVHRSLKVAKSGLKKRNRHA* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4483 143 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Psa4g4483 143 Gene3D - 7 133 - -
Psa4g4483 143 PANTHER 60S RIBOSOMAL PROTEIN L28 1 143 IPR002672 GO:0003735|GO:0005840|GO:0006412
Psa4g4483 143 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4483 Psa-Chr4 397760821 397762650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4483 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 70.629 2.31e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4483 K02903 - gmx:100499921 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4483 4 397760821 397762650 Psa5g6764 5 560888292 560891087 ECH
Psa4g4483 4 397760821 397762650 Psa4g4483 4 397760821 397762650 ECH