Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4472 ATGGATTCCTCGGTCAACTTGCTGCCCGCAAAACGCCCTGCTCCAACTGGAATTTCGTCAGAGGAAGGATGCAAAAAACGTAAATTATCAAGCAATGTTAATGTTGTAGATTACAAAAATCCTTATGCAATCTCAGATGTTCTAAATCATTTAGAGAGTGGAAAATTTGGAAGTGTTACAAAGGATATTGAAGCCCTTGTAAACCGAAAAATGCAGATAATTGGCCCCTGTCTTGTGAAATTTCCCAAACTTATCAACCAATTCCCGAAAGTGGTAACAAATCATGATGAGGAAACTCCCATCTCAGTAAATAAAAAAATGAATGGTATGTCACATCAAAATGTCATAGATTTGGATTTGGATGGAGGACACATGGAAAAGAATGTTTTGGCACCGAAGAGAGAAAATGATGTCCCTGGCACACCATTTCCCATTGTAATAATTGATTCAGACGAGGAAGATGATATGGATCAAAAGTCTCGTCTTCCATTTTATGAAGTTGCATTGCCGAGACCAGTCCAGTCTCCTGCACTAAAAGTGACTGGCTATCATCATGCTCCCATTGCTTACCATGATGCTCCCAATGGTTACCATGGAGAGAGTGCAGATCTAAAATTTGAAACAAGCCTGCCACCTAAAGACCCTCCTAAAGATCCTCCTAAAGATAACACAAGGAAAGATAAAGGTGTTTATGTTGGTGTACATGAGGAGGAAGATCATGAGGTTGATGCTGTAGATGACGGGCTAGACGATATTTGGAGGGAAATGTCAATGGCAATAGAAACTTCTAAAGATGTTTCTGCAGATCCTCAACCCGAAGAAGAAGAGGAAGAAGATGCTGACTGCGATCATTCTTTCGTTTTAAAAGACGATCTTGGTTATGTTTGTCGTGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGGAGCACAAGAACTTATGTCTCTGATTCAGGCAATGCCAAAGAAAAAATGGATGCTTTTGGTGTTATAGTTACTAAAGATGATCTTATGGTTACTGATGTATCAGCACATCCTCGGCATGCGAATCAAATGAAACCACACCAAGTCGAAGGATTCAACTTTTTAGTCAGAAACTTGGCGGGGGACCATCCCGGGGGATGCATCCTGGCTCATGCTCCAGGATCTGGAAAGACTTTCATGATTATCAGTTTCATGCAAAGTTTTCTAGGGAAGTATCCTAATGCCCGACCTCTAGTGGTGCTTCCCAAGGGAATATTGTCGACTTGGAAAAAAGAGTTTCAAACATGGCAAGTGGAAGATATACCACTTTATGACCTATACACTGCGAAGGCAGACAGTAGACTTCAGCAACTGGAGGTTTTAAAACAATGGATGAATAACAGGAGTATCCTTTTCTTAGGATACAAACAGTTCTCTTCCATTGTGTGTGATAATAGTAATACCAATGCATCGATGAATTGCCAAGAGATATTACTGAAGGTTCCCTCAATTCTCATTTTAGACGAGGGGCACACTCCAAGAAATGAGAATACTGATATGGTACAGTCCCTTTGCAAAGTACATACACCAAGGAAAGTTGTGCTGTCTGGAACCCTTTATCAAAATCATGTCAGGGAGGTATTCAACGTTCTCAATCTAGTGCGACCGAAGTTTTTAAAGATGGATACATCTAGGCCTATTGTTCGACGCATTAAGAGTAAGATCCATAATCCCGACGTGAAAAACTTCTATGATTTAATTGAGAACACATTGCAGAAAGACCCGGATTTTAAAAGGAAAGTGGGTTTAATTCATGATTTGCGTGAAATGACCAATCAAGTTCTTCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTGGTAGATTTCACTGTGTTTCTCAAACTTACACCTAAACAGAAGCATGAAGTTGAGAAAGTAAAAAGGATATCTAGAAAGTTCAAAATGTCTTCTGTGGGCAGTGCTGTGTATCTGCACCCAAAGTTAATGCCCATTGCACAAAAAATAGGTGAAAAGATGATAAAATCTGGTGAAAAGACGACAATCCATGATCATGTAATAGACAATTTTATAGAGGACTTAGACATAAGAGATGGTGTCAAATCAAAATTCTTTCGCAATATGCTGAACCTATGTGAATCAACTGGGGAGAAGCTTCTGGTGTTCAGTCAATATCTTTTGCCTTTGAAATATTTGGAAAGGTTAGCTATAAAATGGAAGGAATGGAGTATTGGAAAAGAAATCTTCGTGATATCAGGAGAGACACTACCTGAACAGAGGGAGTGTTCGATGGAAATGTTCAACAATTCATCAGATGCAAAAGTATTTTTTGGGTCAATCAAAGCATGTGGTGAGGGTATATCATTGGTTGGAGCATCCCGTGTCATCATATTGGATGTTCACCTAAATCCGTCTGTTACTCGTCAAGCTATTGGCCGTGCTTTCCGGCCAGGCCAGAAAAAGAAAGTCTTTGTGTATCGATTGGTAGCTTCTGATTCTCCCGAAGAGGAAGACCACACTACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAGTACTGTGGTGACAGAGCTTTTGAAGTTGAAACACTCGATGTGAAGAAATGTGGCGATCTTTTTCTGGAAAGTCCGTTGTTAGGGGAAGATGTACAAGCCCTGCACAAAAGGTAA 2703 0.3977 MDSSVNLLPAKRPAPTGISSEEGCKKRKLSSNVNVVDYKNPYAISDVLNHLESGKFGSVTKDIEALVNRKMQIIGPCLVKFPKLINQFPKVVTNHDEETPISVNKKMNGMSHQNVIDLDLDGGHMEKNVLAPKRENDVPGTPFPIVIIDSDEEDDMDQKSRLPFYEVALPRPVQSPALKVTGYHHAPIAYHDAPNGYHGESADLKFETSLPPKDPPKDPPKDNTRKDKGVYVGVHEEEDHEVDAVDDGLDDIWREMSMAIETSKDVSADPQPEEEEEEDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYVSDSGNAKEKMDAFGVIVTKDDLMVTDVSAHPRHANQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTAKADSRLQQLEVLKQWMNNRSILFLGYKQFSSIVCDNSNTNASMNCQEILLKVPSILILDEGHTPRNENTDMVQSLCKVHTPRKVVLSGTLYQNHVREVFNVLNLVRPKFLKMDTSRPIVRRIKSKIHNPDVKNFYDLIENTLQKDPDFKRKVGLIHDLREMTNQVLHYYKGDFLDELPGLVDFTVFLKLTPKQKHEVEKVKRISRKFKMSSVGSAVYLHPKLMPIAQKIGEKMIKSGEKTTIHDHVIDNFIEDLDIRDGVKSKFFRNMLNLCESTGEKLLVFSQYLLPLKYLERLAIKWKEWSIGKEIFVISGETLPEQRECSMEMFNNSSDAKVFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLVASDSPEEEDHTTCFKKELISKMWFEWNEYCGDRAFEVETLDVKKCGDLFLESPLLGEDVQALHKR* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4472 900 Gene3D - 329 589 IPR038718 -
Psa4g4472 900 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 710 878 IPR001650 -
Psa4g4472 900 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 22 900 IPR044567 GO:0080188
Psa4g4472 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 556 IPR027417 -
Psa4g4472 900 Gene3D - 624 886 IPR027417 -
Psa4g4472 900 MobiDBLite consensus disorder prediction 1 23 - -
Psa4g4472 900 SMART helicmild6 739 824 IPR001650 -
Psa4g4472 900 Pfam SNF2-related domain 381 645 IPR000330 GO:0005524|GO:0140658
Psa4g4472 900 Pfam Helicase conserved C-terminal domain 715 823 IPR001650 -
Psa4g4472 900 MobiDBLite consensus disorder prediction 262 282 - -
Psa4g4472 900 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 375 554 IPR014001 -
Psa4g4472 900 CDD SF2_C_SNF 707 835 - -
Psa4g4472 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 862 IPR027417 -
Psa4g4472 900 SMART ultradead3 357 567 IPR014001 -
Psa4g4472 900 PANTHER PROTEIN CHROMATIN REMODELING 35 22 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4472 Psa-Chr4 397132943 397139402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4472 721 842 RAD5 or RAD16-like Gene Family AT5G43530 36.885 6.66e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa4g4472 SNF2_N 1.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4472 K10875 - gmx:100780454 1282.7