Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4457 ATGGCCTATCAAAATTTTGTCCATGCATGGAAATCACTTAGGACTGAGAATAATACAAAGAGTTTCGTTCTTTGGTCTATAGTTAGAACTTTCTTAAAAGAAAACATATTAATAGCATTTTATGGATTAATCAGAACTATTTCTGTTGTAGTTTCACCTTTAATACTCTATGCTTTTGTTAACTACTCTAATAGAACTGAGGCAGAACTTAGAGAAGGTCTTTCCATAGTTGGTTTTTTGATTGTCTCCAAAGTGTTGGACTCTTTCTCTCAAAGACATTGGTATTTTAACTCAAAGAGGTCAGGTATGAAAATGAGATCAGCTCTCATGGTGGCAGTTTATCAAAAGCAGCTAAAACTTTCTAGCTCGGCGAGAACAAGACACTCGGCCGGCGAGATTGTGAACTACATTGCAGTTGATGCTTATAGAATGGGAGAATTTCCATGGTGGTTTCATATAGCATGGACTTCTGCATTGCAACTTGTTCTTTCCGTTGTTATTCTTTTCGTTGTTGTTGGTATTGGTGCTCTTCCTGGTTTAGTTCCTCTTCTTATATGTGGACTTCTCAATGTACCATTTGCAAGGAGCCTGCAAAGTTGTCAGTCACAGTTTATGATTGCGCAGGACGAACGTCTTCGATCCACTTCGGAGATTCTAAATAGTATGAAGATAATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAATCGAGTCGCTACGCGATAAAGAGTTCAAATGGTTGTCTAAGGTGCAGATTTTGAAAGCTTCTAGTACATTTCTTTATTGGATGTCTCCTACAGTTATTTCTGCTGTTGTGTTCCTTGGATGTGCTGTTACCAAGAGTGCACCGTTGAATGCTGAAACTATTTTCACTGTTATTTCAACATTGAGGAACATGGGAGAGCCTGTTAAAATGATTCCACAGGCTCTATCCGTTATAATTCAAGTTAAGGTTTCGTTTGATCGTCTTAATAACTTTTTGCTTGATGAAGAGCTAAACAAAGATGATGGTGAAAGAAACTTTAAGCAATGTTCGGTTAACAATGCTGTGGAAATTCAAGATGGCAACTTCATTTGGGATCGTGAATCTGTATCTCCAACTTTAATGGATGTGAATTTAGAAATCAAATGGGGACAAAAAATTGCAGTCTGTGGACCAGTTGGTGCTGGAAAATCATCACTTTTGTATGCAATACTTAGAGAGATTCCCAAGATTTCAGGAACTGTTAATGTAGGTGGCACTCTTGCTTATGTTTCCCAATCTGCATGGATCCAGAGTGGAACAGTTCGCGATAATATTCTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAAAGCAATCAAAGCATGTGCCTTAGATAAGGATATCAATGATTTTAGCCATGGCGATCTTACAGAAATTGGTCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTTCTCGACGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATACTATTCAATGAATGTGTCATGACTGCTTTAAGGGAGAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTATCCGAAGTTGATGCTATCTTGGTAATGGAGGGTGGAAAAGTCATTCAATCAGACACGTATGAGAATCTCCTGATAGCTGGAACAACCTTTAAGCTACTAGTGAGTGCTCATAATGACACAATTACCGAGTTGAATCAAGTTAATGGAATTAAAAGAGGTTCTGAAAATGAGGTTTTGTATAATCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGTCCGATTGGTGCACAGCTTACAGAAGAGGAAGAAAAAGTGATTGGTAATGTTGGATGGAAGCCATTCTGGGATTATATTAATTATTCCAAAGGGAAATTCATGATGTGTTTGATCATATTAGGACAATCTGTTTTCTTGGCTTTGCAAACTGCATCAACCTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAGTAACAAATGACGTATTGATTGGAGTTTATGCACTAATTTCTCTTTCTAGTGTTGTTTTTGTCTATATAAGGTCTTACATCACTGCACTTCTTGGATTAAAAGCTTCCACTACTTTCTTCTCAAGCTTCACTGCAGCTATCTTCAATGCTCCAATGTTGTTCTTCGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCCGATTTGAGTATTTTGGACTTTGATTTACCTTTTTCCATCACCTATGTAGCATCTATGACAATTGAAATTTTGGTGATAATTTGTATAATGGTTTCAGTCACATGGCAAATTCTCATTGTTGTTGTTCCTGCAATGGTTGCATCAATATACATTCAGCTATATTATCAAGCTACTGCTAGGGAACTAATACGGATCAACGGAACAACCAAAGCTCCAGTCATGAATTTTGCAGCCGAGACATCACTTGGAGTGGTTACTATAAGAGCATTCAACATGGTGGACAATTTTTTCCAAAACTACTTAACACTTGTGGACACAGATGCTTCATTGTTCTTTCATTCGAATGTGGCAGTGGAATGGGCAGTTTTAAGGATTGAAGCACTTCAAAATTTGACTGCCATCACTGCAGCTTTGTTACTTATTCTACTTCCTCAGGGATATGTATCTCCAGGCCTTGTGGGTCTGTCTCTTTCTTATGCACTTCACTTGACAACAGCCCAAACATTTTGGAGTAGATGGTTCGCCGACATGTCAAATTATATTATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCGGTTGAGCCTCCTGCCATTCTGGATCATAACCGGCCACCATCTTCATGGCCTTCCAAAGGCAGGATTGATCTTCAAGACTTGGAGATTAGGTATCGTCCTAACGCTCCATTAGTCCTCAAGGGAATTACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTCGAGCCTTCAAGAGGCGATATTCTCATTGATGGGATAAACATATGCTCAATAGGGTTGAAGGATTTGAGAACGAGGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTGGATCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTGTGGAGAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAATCTCTTGGACTCTTCGGTGAGTGATGAAGGTGGAAACTGGAGCTTAGGACAAAGGCAATTGTTTTGTCTTGGAAGAGTTTTACTTAAGAGAAATAGAATTCTAGTTCTGGATGAAGCTACTGCATCCATTGACTCAGCTACAGATGCCATTCTACAAAGAGTAATTAGACAAGAATTTGCAGAATGCACAGTCATAACTGTGGCTCATAGAGTTCCAACAGTAATAGACATTAAAGTCAGATCAAACTAG 3501 0.3867 MAYQNFVHAWKSLRTENNTKSFVLWSIVRTFLKENILIAFYGLIRTISVVVSPLILYAFVNYSNRTEAELREGLSIVGFLIVSKVLDSFSQRHWYFNSKRSGMKMRSALMVAVYQKQLKLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHIAWTSALQLVLSVVILFVVVGIGALPGLVPLLICGLLNVPFARSLQSCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLIESLRDKEFKWLSKVQILKASSTFLYWMSPTVISAVVFLGCAVTKSAPLNAETIFTVISTLRNMGEPVKMIPQALSVIIQVKVSFDRLNNFLLDEELNKDDGERNFKQCSVNNAVEIQDGNFIWDRESVSPTLMDVNLEIKWGQKIAVCGPVGAGKSSLLYAILREIPKISGTVNVGGTLAYVSQSAWIQSGTVRDNILFGKPMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNECVMTALREKTVILVTHQVEFLSEVDAILVMEGGKVIQSDTYENLLIAGTTFKLLVSAHNDTITELNQVNGIKRGSENEVLYNQSEGEISSIKGPIGAQLTEEEEKVIGNVGWKPFWDYINYSKGKFMMCLIILGQSVFLALQTASTFWLAIAIEIPKVTNDVLIGVYALISLSSVVFVYIRSYITALLGLKASTTFFSSFTAAIFNAPMLFFDSTPVGRILTRASSDLSILDFDLPFSITYVASMTIEILVIICIMVSVTWQILIVVVPAMVASIYIQLYYQATARELIRINGTTKAPVMNFAAETSLGVVTIRAFNMVDNFFQNYLTLVDTDASLFFHSNVAVEWAVLRIEALQNLTAITAALLLILLPQGYVSPGLVGLSLSYALHLTTAQTFWSRWFADMSNYIISVERIKQFIHIPVEPPAILDHNRPPSSWPSKGRIDLQDLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGINICSIGLKDLRTRLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPNLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRVPTVIDIKVRSN* 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4457 1166 CDD ABC_6TM_ABCC_D1 37 325 IPR044746 GO:0140359
Psa4g4457 1166 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 648 910 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g4457 1166 SMART AAA_5 986 1165 IPR003593 -
Psa4g4457 1166 SMART AAA_5 379 560 IPR003593 -
Psa4g4457 1166 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 352 575 IPR003439 GO:0005524
Psa4g4457 1166 Pfam ABC transporter transmembrane region 677 909 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g4457 1166 Pfam ABC transporter transmembrane region 69 296 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g4457 1166 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 1161 - -
Psa4g4457 1166 Gene3D - 346 579 IPR027417 -
Psa4g4457 1166 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 2 1161 - -
Psa4g4457 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 950 1161 IPR027417 -
Psa4g4457 1166 CDD ABCC_MRP_domain1 352 552 - -
Psa4g4457 1166 CDD ABCC_MRP_domain2 958 1160 - -
Psa4g4457 1166 Gene3D ABC transporter type 1, transmembrane domain 11 333 IPR036640 GO:0005524|GO:0016021
Psa4g4457 1166 Gene3D ABC transporter type 1, transmembrane domain 613 940 IPR036640 GO:0005524|GO:0016021
Psa4g4457 1166 SUPERFAMILY ABC transporter transmembrane region 631 942 IPR036640 GO:0005524|GO:0016021
Psa4g4457 1166 Gene3D - 943 1163 IPR027417 -
Psa4g4457 1166 Pfam ABC transporter 977 1125 IPR003439 GO:0005524
Psa4g4457 1166 Pfam ABC transporter 370 504 IPR003439 GO:0005524
Psa4g4457 1166 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 317 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g4457 1166 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 960 1161 IPR003439 GO:0005524
Psa4g4457 1166 CDD ABC_6TM_ABCC_D2 644 935 IPR044726 GO:0140359
Psa4g4457 1166 ProSitePatterns ABC transporters family signature. 477 491 IPR017871 GO:0005524
Psa4g4457 1166 SUPERFAMILY ABC transporter transmembrane region 24 331 IPR036640 GO:0005524|GO:0016021
Psa4g4457 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 573 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4457 Psa-Chr4 396353386 396358196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4457 347 597 Calmodulin-binding Proteins AT2G36910 26.568 1.48e-21 99.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4457 4 396353386 396358196 Psa4g4457 4 396353386 396358196 ECH