Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4456 ATGAGTATTGTGTATACTCATGCTCAAAACTATTCTGAATTTGAGTCAAGCCTTGGTTTCTTCAATCAAGAAACTTTCAGAAATGATAATCAGCAATATTATTCTCCCTCCACAAGTTCAGAGATGGAAACAATGTTTACCAACTCTCATCATTTGGCAGTGAAACAAGAAGAAAATGAACCCTTTTCATCACACTACAATGGTTACTCTTCTTATGCATCATCTTTAAATCCGATGATTTGCCAAACTCAGCAGAATCAAGGATTGCCTAATGACTTTGATGCTTCATTTAGTGCTGTGAGTTCTTTCGATTCGGAGAATTATATCTCCGAAACTAACATTGATTCTTCTACTAAGAATTGCTCCAATCTCATTAGGCACAAGAGTTCCCCTGCTGAGTTTTTCTCCAACTATCCACTTCATAATGCTTCTATGAATTTCTCATCTACACAAATTATTGAAAATGATGAACATGAAGCTCTTCGACCAAATTGTATTACAAGTAGAAACATTGGAAAAAGTTACATGCCTAGCTTCACTACTGACTGTTGGGATAGTTCTACGCTCAAGGCCCAAAAAACATCCACTATCAATGGTGAAATCATGTTTTCCACTTCAAATGCTTTGGAAACTCAGGAATTAGACTTTGGATACCAAAAACTTGGTCTGAGCCACCATTTGAGTCTGCCAAGCTCTTCTACAAAGATGACTAGTATGGACAAGTTTTTTCACATTCAAGGATCTGTTCCATGCAAAATTCGCGCCAAAAGAGGCTTTGCCACTCATCCAAGAAGCATTGCAGAGAGGGAAAGAAGAATAAGAATTAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAATTCAGATAAGCAAAGCAGCACAGCAGATATGTTGGATGTAGCAGTTAACTACATTAAAGACCTTAGGAAACAACTTAAGATATTATCAGAAACTAAGGCAAAATGCAGTTGTACAAGTAATTAG 987 0.3678 MSIVYTHAQNYSEFESSLGFFNQETFRNDNQQYYSPSTSSEMETMFTNSHHLAVKQEENEPFSSHYNGYSSYASSLNPMICQTQQNQGLPNDFDASFSAVSSFDSENYISETNIDSSTKNCSNLIRHKSSPAEFFSNYPLHNASMNFSSTQIIENDEHEALRPNCITSRNIGKSYMPSFTTDCWDSSTLKAQKTSTINGEIMFSTSNALETQELDFGYQKLGLSHHLSLPSSSTKMTSMDKFFHIQGSVPCKIRAKRGFATHPRSIAERERRIRISARIKKLQDLFPNSDKQSSTADMLDVAVNYIKDLRKQLKILSETKAKCSCTSN* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4456 328 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 143 - -
Psa4g4456 328 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 142 327 - -
Psa4g4456 328 SMART finulus 265 315 IPR011598 GO:0046983
Psa4g4456 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 324 IPR036638 GO:0046983
Psa4g4456 328 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 142 327 - -
Psa4g4456 328 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 29 143 - -
Psa4g4456 328 Pfam Helix-loop-helix DNA-binding domain 265 309 IPR011598 GO:0046983
Psa4g4456 328 Gene3D - 261 327 IPR036638 GO:0046983
Psa4g4456 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 309 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4456 Psa-Chr4 396282036 396283999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4456 122 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 42.723 1.31e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g4456 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4456 - - cam:101493473 357.836