Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4427 ATGTTTGGTTTAAGAGACTTAGTTCTCATAGCCCAAACCCCTTCCTCACTTCACCACCACCAACAACAAAACCAACCCATTTCATCTAATCACCCTCCTAACCTTCCTCTACCTTCATCATCACCTCTCAGTGTTGGGCTTGGAATTTTCCCACTCCTAACCACCACTCACATTGATACTACTACTACTAATAACAATAATCAAGACTCAAACTTTTGGAATCTCAAGATGTGTCAACCACAGCAAGTGATGATGATGATGGATTCAACAAGAAAAGGGGTTGAAGAAGATGATGAAAAGATTCAAAATTTGATGATGGGCTGTGAGGAGAATGGTGAGTTTAGAGTGTGTCAAGATTGTGGAAACAGAGCTAAGAAAGATTGTAGCTTTAAAAGATGCAGGACTTGTTGTAAAGGCCGCGGGTTTGATTGTAGTACTCACGTGAAGAGCACGTGGACTCCGGCTTCCATGCGGCGGGACCGGCATGTTGTGGTGGCTGAAGGTGGTGGCGACAGTGACGGTTCTTCTGGAACTAAGAGGCAGAGGATTTTTGTAGCATCATCATCGCATGATAATTTTGCTGCTACCTCTCATAGTTCAAGCTCTAATGCTGCTACTACAAGAAGCTTAAGCTTGGATATAACTAGCTCTTGTCACCAAGATGTTGGTTTCAAGCAATCTTTGCCACGGTATGTGACTGCACCTGCTGTTTTCAAGTGTCATAGAGTTTCTGGCATCGGCAATGGTGATGAGGATGAAATTGCTTACTTGGCTACTGTGAATATTAATGGCCATGTGTTCAAAGGGTTTGTTTATGATCAAGGTGTTGTTGTTGATGGAAAAGATGAAACAACAATGGGCTGTGTTTCAGAATTGCAACTTGGAAGTAATGGAAGTGGAAAGAGTAACAATAATAGGGAATGTTCTTCTGTAATTCAGGTTCCAACAACTAGTGCTTACCCTGCTTCTGCATGCTGA 978 0.4243 MFGLRDLVLIAQTPSSLHHHQQQNQPISSNHPPNLPLPSSSPLSVGLGIFPLLTTTHIDTTTTNNNNQDSNFWNLKMCQPQQVMMMMDSTRKGVEEDDEKIQNLMMGCEENGEFRVCQDCGNRAKKDCSFKRCRTCCKGRGFDCSTHVKSTWTPASMRRDRHVVVAEGGGDSDGSSGTKRQRIFVASSSHDNFAATSHSSSSNAATTRSLSLDITSSCHQDVGFKQSLPRYVTAPAVFKCHRVSGIGNGDEDEIAYLATVNINGHVFKGFVYDQGVVVDGKDETTMGCVSELQLGSNGSGKSNNNRECSSVIQVPTTSAYPASAC* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4427 325 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 325 IPR007818 GO:0003700|GO:0006355
Psa4g4427 325 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 1 325 - -
Psa4g4427 325 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 116 158 IPR006510 -
Psa4g4427 325 Pfam Domain of unknown function (DUF702) 116 276 - -
Psa4g4427 325 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 228 276 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4427 Psa-Chr4 392839448 392841154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4427 1 320 C2H2 Transcription Factor Family AT5G12330 37.160 1.13e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Psa4g4427 DUF702 1.2e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4427 - - gmx:100790311 327.405