Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4425 ATGAAAACATTAACTGTCAATACTGAGCATTCTTTTTCCAGTTTACTGGAATTTGCTTCTAACGATGATATTGAAGGATTTAAGCTGCTTTTAGATAAAGAAGGGGCTTCTTCAATTAATGAGGTAGGGATTTGGTACGGTCGGCAAAATGGGTCTAAGAAGATTGTTATGGATTATAAAACTCCTTTGATGGTTGCTGCTGCTTATGGTAGTATTGATGTTATGAAGCTTATACTCTCGTATCCGGAAGCTGATGTGAATTTTGCTTGTGGGGTGAATAAAAGCACTGCCCTTCACTGTGCTGCTTCTGGTGGGTCTGTTAATGTTGTTGATGCTGTTAGGCTTCTTATAACGGCGGGTGCCCATGTTAGTTGTGTTGATGCCGATGGTAATCTTCCTTTTGATGTCATTTCACTGCCCTTCACTGTGCTGCTTCTGCTGCAAAGAATTAAAGCAGTTCTCGAGGAACTTCTTTTGGATAATGGTTCTGATAACGGATCTGTTGGTGAGTTCTTTGGTCCGGTGTCTGTTGATGCTTCTAGTCTTGGTTCGCTTGAAAATGAGATGCCGTTGCCATACTCTCCTTCAGTGTCACCACCTTCTCCTGTGGCGAATTTGAAGTTTACTGAGAAGAAAGAGTATATAGTTGATCCATCAATTCCTGATATAAACAACAGCATATATGCAAGTGATGAATTTCGGATGTTTTCTTTCAAGGTCCGTCCTTGTTCTCGTGCGTATTCTCATGATTGGACTGAGTGTCCGTTTGTTCATCCAGGAGAGAATGCTCGGAGGAGAGACCCTAGGAAGTTTCATTACAGCTGCGTGCCTTGCCCAGAATTTAGGAAAGGGACTTGTAGGCGTGGAGATATGTGTGAATATGCTCATGGAGTATTCGAGTGCTGGCTACACCCAGCTCAGTATCGAACACGTCTCTGTAAAGATGGTACTAGTTGTAATAGAAGGGTGTGTTTCTTTGCACACGTTACGGAGGAATTGAGGCCATTGTATCCGTCAACTGGATCTGCGGTTCCTTCACCACGTTCATCTGGATCTGCTCTTAATGTGATGGACATGGCTGCTGCAATGAACCTTTTGCCCGGTTCACCCTCATCAGTCTCTTCCATGTCTCCTCATTTTGCCCAGCCAATGTCCCCTTCTGGGAATGGCATCTCATTTTCAAGTGTTGCCTGGGGACAGCAAAATGTTCCAGCTCTTCATTTACCAGGAAACAATCTTCAATCTAGTCGATTGAGATCTTCTTTTAGTGCTCGCGACATTCTGCCTGAAGACTTCAGTGTGCTTAGCGATTTTGATGGCCAACAGCACCTTATGAACGACTTGAGCTGTTTCTCACAGCCCCACCCTGGCTCTTGTCAGTCTAAAGCACTAACACCATCAAATCTTGAAGGGCTCTTTTCTGCTGAGATTTTGTCATCTCCCCGGTATTCTGACCCACCAATGCCTTCTGTTTTTTCCCCCTCACATAAATCAGCTGCTATGAATCAGTTTAATCAGCATCAAAATATGTTATCACCTATAAATATTAACATGCTATCTCCTAAAAATGTTGAGCATCCTCTGTTACAGACTTCATTTGGTGTCCCTTCTTTGGGTAGGATGTCACCTAGAAATGTTGAACCAATCTCCCCAATGAGCCCCCGAATGTCTGCATTTGCTCATCGCGAGAAACAACAGCTGCGGAGTATTAGTTCTAGGGACCTTGGTCCAGTAAGTGTTGAACCAATGTCCCCAATGAGCCCTCGAATGTCTACATTTGTTCATCATGAGAAACAACAGCAACAGCTGCGAAGTATTAGTTCTAGGGACTTTGGCTCCAACGTTCCTGCCTTAGTTAATGGATCCCCTACAAGCCAAAGGTCCAAGTGGGGATCTCCTAATGGGTTGGCTGATTGGTCTGTTAACGGAGATGGTCTAAGTTGCCAAATGCACAGTGCATCCTCATTTGAACGTAAAATCAACGGGGAACAAGAGCCTGATCTATCATGGGTCCAATCACTAGTGAAGGATTCATCACCTGAGATGATTAAAGAGAAGTTTGCATCTTCTGGCCCTATTGCATCCGGTGATGAACTGAATTCCAATTCACAAATTGAATCTATTGATCATTCTGTTTTAGGAGCTTGGCTTGAGCAAATGAAACTGGATCAGCTTGTAGTCTAA 2184 0.4359 MKTLTVNTEHSFSSLLEFASNDDIEGFKLLLDKEGASSINEVGIWYGRQNGSKKIVMDYKTPLMVAAAYGSIDVMKLILSYPEADVNFACGVNKSTALHCAASGGSVNVVDAVRLLITAGAHVSCVDADGNLPFDVISLPFTVLLLLQRIKAVLEELLLDNGSDNGSVGEFFGPVSVDASSLGSLENEMPLPYSPSVSPPSPVANLKFTEKKEYIVDPSIPDINNSIYASDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGTCRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHVTEELRPLYPSTGSAVPSPRSSGSALNVMDMAAAMNLLPGSPSSVSSMSPHFAQPMSPSGNGISFSSVAWGQQNVPALHLPGNNLQSSRLRSSFSARDILPEDFSVLSDFDGQQHLMNDLSCFSQPHPGSCQSKALTPSNLEGLFSAEILSSPRYSDPPMPSVFSPSHKSAAMNQFNQHQNMLSPININMLSPKNVEHPLLQTSFGVPSLGRMSPRNVEPISPMSPRMSAFAHREKQQLRSISSRDLGPVSVEPMSPMSPRMSTFVHHEKQQQQLRSISSRDFGSNVPALVNGSPTSQRSKWGSPNGLADWSVNGDGLSCQMHSASSFERKINGEQEPDLSWVQSLVKDSSPEMIKEKFASSGPIASGDELNSNSQIESIDHSVLGAWLEQMKLDQLVV* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4425 727 SUPERFAMILY Ankyrin repeat 11 136 IPR036770 -
Psa4g4425 727 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Psa4g4425 727 SMART ANK_2a 10 41 IPR002110 GO:0005515
Psa4g4425 727 SMART ANK_2a 93 125 IPR002110 GO:0005515
Psa4g4425 727 SMART ANK_2a 58 88 IPR002110 GO:0005515
Psa4g4425 727 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Psa4g4425 727 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Psa4g4425 727 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Psa4g4425 727 Gene3D - 2 174 IPR036770 -
Psa4g4425 727 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Psa4g4425 727 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 297 IPR000571 GO:0046872
Psa4g4425 727 PANTHER UNKEMPT FAMILY MEMBER 1 576 IPR045234 -
Psa4g4425 727 PANTHER UNKEMPT FAMILY MEMBER 571 725 IPR045234 -
Psa4g4425 727 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 571 725 - -
Psa4g4425 727 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 576 - -
Psa4g4425 727 Pfam Ankyrin repeats (3 copies) 19 125 IPR002110 GO:0005515
Psa4g4425 727 Gene3D - 272 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4425 Psa-Chr4 392519726 392523403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4425 9 724 C2H2 Transcription Factor Family AT5G12850 48.988 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa4g4425 Ank_2 4.5e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4425 - - cam:101514203 1127.08