LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa4g4407	ATGGCGTCGGTTGGCGTGGCACCAACTTCGGGTTTTAGAGAAGCCAGTGGTCATGGTGAAATTGGTGTTGATGTATTGCTAGAGGAAATGAATGATATGAAAATTAGGGATGATAGGGAAGTGGAAGCTACCGTTGTTGACAGTGGCAATGGAACGGAGACTGGACATATCATTGTAACTACTATTGGTGGTAGAAATGGTCAGCCAAAGCAGACTATAAGCTATATGGCAGAGTGTGTTATAGGACATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACAGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTATAAGAACCGGGAATTGCAAACAATGCGCCTTCTTGATCACCCAAATGTTGTCTCGTTAAAGCATTGTTTCTTTTCAACCACTAAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTAAAACAGTTCATCGTGTCATTAAGCATTACAACAAGTTGAACCAAAGGATGCCAATGATTTATGTGAAGCTCTATACATACCAGATCTTTAGGGAATTGTCTTATATTCATCGTTGTATTGGAGTCTGCCATCGAGATATCAAACCTCAAAATCTATTGGTCAATCCACACACCTACCAGGTTATATTATGTGACTTTGGAAGTGCAAAAGTCTTGCTATTAATGCCTGGTCTGTTGGTTGTGTTTTGGCTGAACTGCTGCTTGGACAGCCGTTGTTTCCTGGTGAGAGTGGAGTTGATCAGCTTATTGAGATCATCAAGAGGAACTGCCACTGTATCCAGATATCCACCAAATATTCCTGATAGCAACCATTCAACTTCTCTTCCGGCTTTTGGAGCATCAAGAGTTTCTGCTCACTATAATCCTTATGCATCAACCTTTGAGCAGCCGCTAAGTTCAAAATTTAGTTCAAGCTTTTTACGACAAGGAAATGATATAGTTTATGGTAAAAATTATGGTCCTTCTAGATATAGGGAAGGGGATAGTGCTGGATCAAGACATACAACATCGCCAAAACCAGCAGGAGCTGTTGATTGGATCTTGCCAGGGTCTGGTGAACAATATGATCCACTTTTTGACAGCATTGAGCCATCATCATCTTTGAAGAAATTTGATTTTGAGCAGAAGCAGGAAGTTACAAGCGAATCCAATTTTAGTCTAAGGCCTAAAAGTTCACATTTGTCATTACTCGGAAACTCTACAACTGGAAAGTCATCCATACGAAAGTTTCATCCTTCTGATGAGCAGCATGTAAATTCATCCAAGCCTGGGATTTCACGGAACATATCATCTACTCTCATTGATAATGAAAACCATGTTCAAGCGGTAGAAAATGAGAGTTTGTCACACGTCCCCGAGTTGATTGGCTGTGATTTAAAAGATCTCGAGTTGACTCTATCAACTTGCAACATGAAAGTTGGTAATGATAAGATCATCCAGAAGTTGACGTTATCACAGGAAATTGGAGGCCTGCGTAACAGTACAGTTGTTCGGGGAATGGTTCTGAGAAATGAAGTTGTTGGTAGTATAAAGAGAATTGAAAAGGCAAAGGTTGCCGTGTTTGTGGGTGACGTTGATACATCTGCAACTGAAACTAAAGGAACGGTTCTCATACATTCAGCTGAGCAGCTAGAGAATTATTCAAAAACTGAAGAGGCTAAAGTAGAGGAGCTCATCAAGGCAGTAGTTGATTCTGGTGCCAAAGTGGTTGTAAGCGGAGGGGCAGTAGGAGAGATGGCTTTACATTTTTTCGAGGAAATTGGTGGTGCAAGGGTTACAGTTGTTAAAAATGAAGAAGGTGGCAATTATGTGTCAACTGTTGTCTTGAGAAGAAGTACTGATAGTATACTTGATGATATTAAAAGAGCAGTTGATGATGGAGTGAACACTTACCAAGCCATTGCCGAAGTAAAAATCGAACAGGAAAGAAGTAAGTGGACTGAGGCCGAAAACAGGTGGATTTCCCTGTCTGAAGAACTCAAAGCTGAAGTTGAAGCAAACAGGTCGTTAGCTGAAAAGAGGAAACGTGAATTAGATGCTGAGAGGAAGTGCTCCAAGGAACTGAAGGATGCAATGCACATAGCTATAGAAGGTCATGCACGAGTTTTAGAACAATATGCAAATTTGGAAGAGAAACATGTCCAGCTGCTCGAAAGGCATAAAAAGATTCATGATGGAATTGATGATATGAAAAAAAGCATCTTTCAGAACAGGAAGGTCAGTGACACCAACTGCAGGAGTATCAGACCTACTGCTGGAAATATAAAGTCTAGCTCGAAAATTGTCTTCGATTTGAACACTCTTCCATACCATTATATTTGTTG	2345	0.4051	MASVGVAPTSGFREASGHGEIGVDVLLEEMNDMKIRDDREVEATVVDSGNGTETGHIIVTTIGGRNGQPKQTISYMAECVIGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTKKDELYLNLVLEYVPKTVHRVIKHYNKLNQRMPMIYVKLYTYQIFRELSYIHRCIGVCHRDIKPQNLLVNPHTYQVILCDFGSAKVLLLMPGLLVVFWLNCCLDSRCFLVRVELISLLRSSRGTATVSRYPPNIPDSNHSTSLPAFGASRVSAHYNPYASTFEQPLSSKFSSSFLRQGNDIVYGKNYGPSRYREGDSAGSRHTTSPKPAGAVDWILPGSGEQYDPLFDSIEPSSSLKKFDFEQKQEVTSESNFSLRPKSSHLSLLGNSTTGKSSIRKFHPSDEQHVNSSKPGISRNISSTLIDNENHVQAVENESLSHVPELIGCDLKDLELTLSTCNMKVGNDKIIQKLTLSQEIGGLRNSTVVRGMVLRNEVVGSIKRIEKAKVAVFVGDVDTSATETKGTVLIHSAEQLENYSKTEEAKVEELIKAVVDSGAKVVVSGGAVGEMALHFFEEIGGARVTVVKNEEGGNYVSTVVLRRSTDSILDDIKRAVDDGVNTYQAIAEVKIEQERSKWTEAENRWISLSEELKAEVEANRSLAEKRKRELDAERKCSKELKDAMHIAIEGHARVLEQYANLEEKHVQLLERHKKIHDGIDDMKKSIFQNRKVSDTNCRSIRPTAGNIKSSSKIVFDLNTLPYHYIC	781

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa4g4407	781	Pfam	Protein kinase domain	78	226	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa4g4407	781	Coils	Coil	668	688	-	-
	Psa4g4407	781	Gene3D	GroEL	499	614	IPR027409	-
	Psa4g4407	781	PANTHER	SHAGGY-RELATED PROTEIN KINASE ALPHA	1	227	-	-
	Psa4g4407	781	Gene3D	Phosphorylase Kinase; domain 1	59	154	-	-
	Psa4g4407	781	Coils	Coil	706	726	-	-
	Psa4g4407	781	SUPERFAMILY	GroEL-intermediate domain like	498	641	IPR027410	-
	Psa4g4407	781	Pfam	TCP-1/cpn60 chaperonin family	492	595	IPR002423	GO:0005524
	Psa4g4407	781	ProSiteProfiles	Protein kinase domain profile.	75	392	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa4g4407	781	Coils	Coil	548	568	-	-
	Psa4g4407	781	SUPERFAMILY	Protein kinase-like (PK-like)	74	227	IPR011009	-
	Psa4g4407	781	Gene3D	Transferase(Phosphotransferase) domain 1	155	241	-	-
	Psa4g4407	781	ProSitePatterns	Protein kinases ATP-binding region signature.	81	105	IPR017441	GO:0005524
	Psa4g4407	781	SUPERFAMILY	GroEL apical domain-like	501	605	IPR027409	-
	Psa4g4407	781	MobiDBLite	consensus disorder prediction	410	430	-	-
	Psa4g4407	781	SMART	serkin_6	75	486	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa4g4407	781	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	1	227	-	-
	Psa4g4407	781	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	196	208	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa4g4407	Psa-Chr4	391370151	391374102	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa4g4407	75	239	MAP Kinase Gene Family	AT5G19010	35.673	2.67e-22	100

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Psa4g4407		Pkinase	5.2e-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa4g4407	K00924		-	gmx:100780226	421.009