Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4401 ATGGCATCTTCAAATTCACCATGTGCAGCATGCAAGTTTCTACGCCGCAAATGCCAACCAGAATGTGCATTTGCACCTTATTTTCCACCTGATCAGCCTCAAAAATTTGCAAATGTTCATAGAATTTTTGGGGCAAGTAATGTTACAAAGCTTCTCAATGATTTACACCCTCACCAACGTGAAGATGCTGTTAATTCTCTTGCTTATGAAGCTGAAATGAGGCTTCGTGATCCTGTTTACGGTTGCGTAGGTGTAATTTCTCTTCTTCAACACCAACTTCGTCAGCTTCAAATGGATCTTTATTGCGCCAAATCCGAACTCTCTCGGTACCAAAACTTAAGCATCGCAGCGGCCACTACCGGTCTCCTGACGGGTGAATCTGTAACGGCCGCTACGACTAATTACCACCACCATACTGGTGGTGGTAATAACAGTAACGGCAATAGCCGTGATAGTAACCATCATTATCATCTTCAGCACCATCATCACCATCAGTTTTTTCCAAGGGATCAACATCAACAACATAATTTGGTTAGAAACTTTGATGCTGGAATTGGAAACAACTATGATGCGAGTCTTTTGGCTATGAATATATCTGCTAGCTTAGGTCAGATCAATCAGCTTCAACATCACAGTGCCACCGGTGGTGGTGGTGATGACCGCCGTACTGTTAACCGCTCCTAG 684 0.4357 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLSIAAATTGLLTGESVTAATTNYHHHTGGGNNSNGNSRDSNHHYHLQHHHHHQFFPRDQHQQHNLVRNFDAGIGNNYDASLLAMNISASLGQINQLQHHSATGGGGDDRRTVNRS* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4401 227 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Psa4g4401 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 186 - -
Psa4g4401 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 186 - -
Psa4g4401 227 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4401 Psa-Chr4 390007617 390009524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4401 2 227 AS2 family AT1G65620 61.504 3.98e-81 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa4g4401 LOB 3.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4401 - - mtr:MTR_8g040900 369.392