Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4394 ATGAGTCGAGAGCAGCCGAAGAGGGGGAAGCAAGAGAAAAGTTGTGATGGTGCTGAGAAGGTTATTGTTGCTGTTAAGGCGTCAAAGGAAATTCCAAAGACGGCTCTTGTTTGGTCATTGACTCATGTTGTTCAACCTGGTGATTGCATTACACTGCTTGTTGTTGTTCCTTCTCAAAGTTCAGGTAGAAGATGGGGTTTTCCTAGATTTGCTGGTGACTGTGCCAGTGGTATTAAGAAGTATCCTCCAGGAACAATTTTAGAGCAAAAAAGTGATATTACTGATTCTTGCTCTCAGATGATCCTTCAGCTCCACGATGTCTATGATCCGAATAAGATAAATGTGAGGATTAAAATTATTTCTGGATCACCTTGTGGATCAGTGGCCGCAGAAGCCAAGAAAGGACAAGCCAGTTGGGTTGTTTTAGACAAACATCTCAAACATGAGGAAAAGAGATGCATGGAAGAGTTGCAGTGTAACATTGTTGTTATGAAGCGTACTCAACCGAAAGTGCTTCGTTTGAACTTGATTGGAGCACAAAAGAAGGAAGTTGAAGAAGCTGGTACATCACATTCTGAGCAAGATGATATGCCTGAAAAGCAAACCGAAAACAAGATGGATTCTTTAGTAGATTCTATCAAAGGACCAAATGTTACTCCAACTAGCAGCCCTGAGTTAGGGACACCATTCACCGCTACTACTGAAGCTGGCACTTCATCAGCTTCAAGCTCTGATCCTGGAACTTCACCGTTCTGTATCCCAGAGATGAATGGTGAGAGGAAGAAAGAAGAAACCATTAAGGAAAGTCAAGAACTTTGTGATACTAATTCAGACACAGAAAGTGAAAGTCTGTCGACGGCTTCGGCTAGCTTTAGGTACCAGCCGTGGATCACGGAATTGCTTTTACATCAACAATCATCTCAACGCAACGGAGAAAGATCAGAGGCGTATCATGGTATGCCTCAAGCAACTACAACCAAAGCTTTGCTAGAAAAGTATTCTAGGCTTGATAGAGGAGCGGGAATGGAAATGTCGGCAGCATATAGAAATGACTCGGATTTTAGTGGTAATTTAAGAGAAGCAATAGCGTTATCAGGAAATGCTCCACTTGGTCCACCTCCATTGTGTTCAATGTGCCAACACAAGGCACCTGTTTTTGGAAAACCTCCAAGGTGGTTCAGCTATGCTGAGTTGGAACTCGCTACCGGTGGATTTTCACATGCCAACTTCTTGGCGGAAGGAGGGTATGGATCGGTTCATCGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCGCAAGGTGATGTCGAATTTTGCTCTGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGATTCTGTATAGAGGATAAGAGAAGGCTTCTTGTTTACGAGTACATATGCAATGGATCATTGGATTCACATTTATATGGGCGGCAAAGGGATCCTTTAGAATGGTCCGCACGGCAGAAAATTGCTGTTGGAGCTGCTCGCGGGTTAAGGTATCTTCACGAAGAGTGCAGAGTTGGTTGTATCATCCACCGCGACATGAGGCCAAACAACATTCTCATAACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGATTGGCAAGGTGGCAACCTGATGGAGACATGGGTGTGGATACTAGAGTAATTGGAACATTCGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATCACCGAAAAAGCTGATGTTTATTCCTTTGGGGTGGTATTAGTGGAGCTTGTTACCGGTAGAAAAGCTGTCGATCTCACTCGGCCAAAGGGACAACAGTGTCTTACTGAGTGGGCCCGGCCACTATTAGAAGAATATGCCATTGACGAACTGATTGACCCGAGGCTTGGACGTCACTATTTAGAACATGAGGTCTATTGCATGTTGCATGCTGCTTCATTATGCATAAGGAGAGATCCTCATTGTAGACCACGAATGTCACAGGTTCTCCGAATTCTAGAGGGCGACATGGTGATGGACACAAATTACATTTCTACTCCAGGCTATGATGTTGGAAACAGGAGCGGTCGCATTTGGTCAGAGCCACTGCAGAGACAGCATCATTACAGTGGTCCCCTCTTAGAAGATTCATTGGAGTCATCATTCAGTGGAAAACTATCTCTTGACAAGTACAAACCTCCTTCCTATTGGGATAGGAGTAGGGACAAGCCTATAAGGGCCTCATCTGAAGATGATATTTGA 2268 0.4422 MSREQPKRGKQEKSCDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRWGFPRFAGDCASGIKKYPPGTILEQKSDITDSCSQMILQLHDVYDPNKINVRIKIISGSPCGSVAAEAKKGQASWVVLDKHLKHEEKRCMEELQCNIVVMKRTQPKVLRLNLIGAQKKEVEEAGTSHSEQDDMPEKQTENKMDSLVDSIKGPNVTPTSSPELGTPFTATTEAGTSSASSSDPGTSPFCIPEMNGERKKEETIKESQELCDTNSDTESESLSTASASFRYQPWITELLLHQQSSQRNGERSEAYHGMPQATTTKALLEKYSRLDRGAGMEMSAAYRNDSDFSGNLREAIALSGNAPLGPPPLCSMCQHKAPVFGKPPRWFSYAELELATGGFSHANFLAEGGYGSVHRGVLPEGQVIAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDMGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYAIDELIDPRLGRHYLEHEVYCMLHAASLCIRRDPHCRPRMSQVLRILEGDMVMDTNYISTPGYDVGNRSGRIWSEPLQRQHHYSGPLLEDSLESSFSGKLSLDKYKPPSYWDRSRDKPIRASSEDDI* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4394 755 Gene3D HUPs 6 163 IPR014729 -
Psa4g4394 755 ProSitePatterns Tyrosine protein kinases specific active-site signature. 526 538 IPR008266 GO:0004672|GO:0006468
Psa4g4394 755 MobiDBLite consensus disorder prediction 183 204 - -
Psa4g4394 755 Gene3D Phosphorylase Kinase; domain 1 376 480 - -
Psa4g4394 755 MobiDBLite consensus disorder prediction 256 281 - -
Psa4g4394 755 MobiDBLite consensus disorder prediction 256 274 - -
Psa4g4394 755 ProSiteProfiles Protein kinase domain profile. 405 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4394 755 PANTHER OS01G0253100 PROTEIN 16 710 IPR045271 GO:0004714|GO:0006468
Psa4g4394 755 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 710 - -
Psa4g4394 755 CDD USP_Like 20 145 - -
Psa4g4394 755 CDD STKc_IRAK 411 677 - -
Psa4g4394 755 Gene3D Transferase(Phosphotransferase) domain 1 481 687 - -
Psa4g4394 755 MobiDBLite consensus disorder prediction 184 204 - -
Psa4g4394 755 SUPERFAMILY Protein kinase-like (PK-like) 389 684 IPR011009 -
Psa4g4394 755 Pfam Protein tyrosine and serine/threonine kinase 409 673 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4394 Psa-Chr4 389603149 389608204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4394 344 671 Trihelix Transcription Factor Family AT1G68690 49.398 1.73e-100 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Psa4g4394 PK_Tyr_Ser-Thr 1.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4394 - - cam:101503019 1368.21