Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4389 ATGGAGGAAATGCCTACACTCCTTCATGGAACAATTGAAGCTACCATCTTTAAGGCCTCACCTTACACACCATTTCCCCTCTTCAACTGCATATGTACTAATGGAAAGCCTGCATATGTGACCATCAAGATAGACAACGCGAAAGTTGCGAAAACAAGCAAAGAAAGAAACCGTGTTTGGAACCAAACCTTTCATATTCAATGTGCTCATCCAGCTGATTCAGTTATCACCATTACATTGAAAACATCAAATTCCAAGTTAGGAAAATACAGTATCAAAGCCCAACAACTTATAAATGAAGGAAGCTTAATCAACGGATTCTTCCCTCTCGTCATGGAAAATGAAAAACCAAACCCGAAACTTAAGTTGAAGTTTATATTATGGTTCAAGCCTGCAAAATTGGAAGAGAGTTTGGCAAAAGTACTAAGCAATGAGGAATTTCAAGGGCTAATGGATGCAAAATTTCCACAAAGGTCTAATTGTCAAGTGAAACTTTATCATGATGCTCATCATTCTCCTACCTTTCAACCTCCATTTGATCCATGTGGTACTCCAAACAACCTATTTGAGGATATCTATAAAGCCATTGAAGGTGCAAAGCATATAGTTTATATTGCAGCTTGGTCCCTCAATCCTAACATAGTTTTGGTAAGAGATCCTCATACAAAAATCCAACATGCAAGAGGAATGAGTTTAGGCGAGCTGTTGAAAAAGAAGGCAGATGAAGGAGTGGCTGTGAGAGTTATGGTTTGGGATGATGAAACATCATTGGCCTTAGTTAAGAACAAAGGTGTAATGAACACACATGATGAGGATACTCTTACTTATTTCAATCATACAAAAGTTATATGCGAAAAGTGTCCTAGATTACACCACAAGTTTCCAACACTATTTGCTCACAATCAGAAAACTATAACTGTTGACATAAAAGTGGCTAAATCGGTTAGCGATAGAGAGATTATGAGCTTTGTTGGTGGTTTAGATTTATGTGATGGTAGATATGATACAGAACAACATTCATTGTTTCAAACACTCATTAAGGAATCACATTGTTATGACTTTTACCAACCAAACATTGAAGGAGCTAGCCTTAACAAAGGAGGACCAAGAGTTCCTTGGCATGATGCTCATGCTTGTGTTATCGGCGAAGCTGCTTGGGACGTGTTAACAAATTTTGAGCAAAGATGGACTAAGCAATGTGATGCTTCTCTTCTACTCCCTACTAGCACCTTGGTAAATCTCATGCCTCGAACAAACTCAAACACTTCGATAGAAAGCAATTGGAACGTTCAAGTTTATAGGTCGATTGATCATGCTTCTGTTGGTGAATTTTGTGGAAATTTCACCGCGGAGAAGAGTATCCACGACGCTTATGTTGAAGCAATTAGGCATGCTGAGAGGTTTATATACATTGAAAACCAATACTTCATTGGTGGATGCCAATGGTGGGGAAAAGATAAGCATTGCGGTTGCACGAATCTAATTCCAATCGAAATTGCATTAAAAGTGGTGAGTAAGATCAAAGCAAAGGAGAGATTTGCAGTGTATATAGTTATTCCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAATATGTTCAAGACATATTGCATTGGACTAGAGAAACTGTGACAATGATGTATAGGTTGATTGGTGAAGCAATAAAAGAAAGTGGTGAAATAGGACATCCAAGAGACTATTTGAATTTCTTTTGTCTTGCAAATAGAGAGCATAAGGGAAAAGGGGAGTATCTTCCACTAGATTCTCCTCATCCTAAAACACAATACTGGCATGCGCAAAAGAATAGAAGATTCATGGTTAATGTCCATTCGAAGCTCATGATAGTGGATGACATATACATAATACTAGGTTCGGCTAACATGAATCAAAGATCCATGGATGGGAAAAGGGACAGTGAGATTGCCATAGGATGCTTCCAATCTCAAGACGAAGTTATGAAACAAAAGAGCCTTGGTGATGTTCATGCATACAGAATGTCACTATGGTATGAGCACACAAATGGTTTCAATGAATTGTTCTTGGAGCCACAAAGTTTGGAATGTGTGAAGAGGATGTGTTCCATTGGAGATCAAATGTGGGAAATCTACAGCAGTGAAGAAATTGTAGACATGGAAGGTGTGCACCTTGTTACTTACCCAATGAGAGTAACACAAGAAGGGTATGTGAGAGACTTGAGTAATGGAGTTTATTTTCTTGATACAAACTCTCTAGTGAAGGGGAAGAGATCTACATTGCCCCCTAACTTGACCACTTAA 2274 0.3865 MEEMPTLLHGTIEATIFKASPYTPFPLFNCICTNGKPAYVTIKIDNAKVAKTSKERNRVWNQTFHIQCAHPADSVITITLKTSNSKLGKYSIKAQQLINEGSLINGFFPLVMENEKPNPKLKLKFILWFKPAKLEESLAKVLSNEEFQGLMDAKFPQRSNCQVKLYHDAHHSPTFQPPFDPCGTPNNLFEDIYKAIEGAKHIVYIAAWSLNPNIVLVRDPHTKIQHARGMSLGELLKKKADEGVAVRVMVWDDETSLALVKNKGVMNTHDEDTLTYFNHTKVICEKCPRLHHKFPTLFAHNQKTITVDIKVAKSVSDREIMSFVGGLDLCDGRYDTEQHSLFQTLIKESHCYDFYQPNIEGASLNKGGPRVPWHDAHACVIGEAAWDVLTNFEQRWTKQCDASLLLPTSTLVNLMPRTNSNTSIESNWNVQVYRSIDHASVGEFCGNFTAEKSIHDAYVEAIRHAERFIYIENQYFIGGCQWWGKDKHCGCTNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGVPESEYVQDILHWTRETVTMMYRLIGEAIKESGEIGHPRDYLNFFCLANREHKGKGEYLPLDSPHPKTQYWHAQKNRRFMVNVHSKLMIVDDIYIILGSANMNQRSMDGKRDSEIAIGCFQSQDEVMKQKSLGDVHAYRMSLWYEHTNGFNELFLEPQSLECVKRMCSIGDQMWEIYSSEEIVDMEGVHLVTYPMRVTQEGYVRDLSNGVYFLDTNSLVKGKRSTLPPNLTT* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4389 757 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 604 631 IPR001736 GO:0003824
Psa4g4389 757 PANTHER PHOSPHOLIPASE D 4 757 IPR015679 -
Psa4g4389 757 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 125 IPR035892 -
Psa4g4389 757 Pfam Phospholipase D Active site motif 607 631 IPR001736 GO:0003824
Psa4g4389 757 Pfam Phospholipase D C terminal 677 747 IPR024632 -
Psa4g4389 757 PANTHER PHOSPHOLIPASE D ALPHA 4 757 - -
Psa4g4389 757 SUPERFAMILY Phospholipase D/nuclease 150 406 - -
Psa4g4389 757 SUPERFAMILY Phospholipase D/nuclease 423 688 - -
Psa4g4389 757 PIRSF PLD_plant 3 757 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Psa4g4389 757 Gene3D Endonuclease Chain A 446 656 - -
Psa4g4389 757 Pfam C2 domain 38 110 IPR000008 -
Psa4g4389 757 Gene3D Endonuclease Chain A 174 431 - -
Psa4g4389 757 SMART pld_4 296 333 IPR001736 GO:0003824
Psa4g4389 757 SMART pld_4 604 631 IPR001736 GO:0003824
Psa4g4389 757 Gene3D C2 domain 32 130 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4389 Psa-Chr4 389523011 389526698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4389 30 757 Phospholipase D Gene Family (Wang group) AT1G55180 60.811 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4389 K01115 - gmx:100812642 1241.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4389 4 389523011 389526698 Psa4g4389 4 389523011 389526698 ECH