Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4379 ATGAAGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAAATTATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCTGTGCCTGTTTTAGTCTCTAAAGCTCTAGAGCTATTTCTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGGGCAAAAACCATGAATTCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAAGGATGTAGTCAGCAAGGTTCCTGACTACGGCCATGGTCACGGCCATACTGATGCTGGTGGTGCTGATGATCAGGCCATTCCAAAAAGAAGAAAAGCAGCAGGTGATGATTGTAATGACAGCGATGAAGAAGCTAAAAGGGGCAAGATGATTGAGTTGGGCCACCCTAGCCCTACTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGACGTGGTCGAGGTCGAGGACGGGCTAGTCAAAGAGAGGGACATCATCAGGAGACTGAGTTTGATCCCTTTCCTTCTATTCAGCCAGTTAGCCAACAGATTACAGATACAAATGTGGTTATACATGATATCTCAGAGCCAAGGGAGTTACCAAAGGAGAATATTGTTGCTGCTGTTGAAAACTCCGACACACTCCGTAATATTGATTTGAATGCCAATATGAGCGAAAATGATGACAAAAAGGCCAACACAGTTGCTAATCTCGCAGTCACTATTCCCAATGCTGCTAATCCCGATGCTGCTAATTCCGATGCCGCTAATCCTGAAGCCGCTAATCCTGCAGCAGCAATTCCTGAAGCTGGGAAAACCTCAATGTCTGAACCTGCTCCAGCAGACAGCATGCATCACGAAGAAATTCCGGGGTGGTCCCTCTCTGAGGTGGACAAGATGGCCATTGATACAATGCAGCTTGCACAGCGAATGGAAGAGGATGATGAAGATTATGACGAGGAGGACGAGTGA 969 0.4592 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLKDVVSKVPDYGHGHGHTDAGGADDQAIPKRRKAAGDDCNDSDEEAKRGKMIELGHPSPTGRGRGRGRGRGRGRGRGRASQREGHHQETEFDPFPSIQPVSQQITDTNVVIHDISEPRELPKENIVAAVENSDTLRNIDLNANMSENDDKKANTVANLAVTIPNAANPDAANSDAANPEAANPAAAIPEAGKTSMSEPAPADSMHHEEIPGWSLSEVDKMAIDTMQLAQRMEEDDEDYDEEDE* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4379 322 MobiDBLite consensus disorder prediction 266 322 - -
Psa4g4379 322 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 320 - -
Psa4g4379 322 MobiDBLite consensus disorder prediction 155 169 - -
Psa4g4379 322 MobiDBLite consensus disorder prediction 96 170 - -
Psa4g4379 322 SUPERFAMILY Histone-fold 3 90 IPR009072 GO:0046982
Psa4g4379 322 MobiDBLite consensus disorder prediction 96 131 - -
Psa4g4379 322 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Psa4g4379 322 PANTHER HISTONE SUPERFAMILY PROTEIN 1 320 - -
Psa4g4379 322 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4379 Psa-Chr4 387147857 387151376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4379 1 221 CCAAT-HAP5 Transcription Factor Family AT3G12480 57.447 1.25e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Psa4g4379 CBFD_NFYB_HMF 2.6e-19 CL0012