Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4359 ATGATGTCTGATGAATCACAAAGGATTGTGGTGATCCACCATGCATCTAGTGACTTGAGTACAAAAGCACTTAAATGGGCCCTTAATGGCTTTTCACTTGATCATGGAGACACCCTTACACTTGTTGCAATTCTTCCACATGTAAACAGTCCAACTAGTGCCAGATTTCGTGCAATATTTGGTACTGATCAGAATATTGTTGAGGGAGAGGTTGCTAAGAAGAAAGAAAAACTGCATAATCATTCTTCTATAAGAAAAATTTCTGACCAGTGTGAAGAACACAAGATTCAGTTCTTGATAGAAGTGCTTCCGGGCAAGTTACCGGAGCATGCTATAGACGCTGCCGTCCGTTTGAAAGCGACGTCAGTTATACTTGATAGAGACATGAAGAAATATAAGAAGGATTTCATGGAGAGTCTCTCTTGTGCTTTGCTAATAATGAAAAGTGGTAACTCCATTAAGCACTTGAGAGAGCCAAGGAAACCAAAGATTTCTTTTACTGGTTATGACAACGGAGCTCCGGAATTCTCGCCGAGTTTGTGGAGCATGACAAACGCGGTTTTCCGTTCAAAATCGAGCTCTAATCTAACGAAAATCGTCTGTCATCAGCTTCATTGTCAAACAAAACAAACGCCCGAAGATAAAGATCTCGATATGGCAAGAGGTTATTGCCTATTACCGATTCCAGATAATCAAAAGACTAGTGTTCTTGAAATGTATCCTAAGGAGACAGCATTTGAACATATCAGAAACCATAAAACATATCAAATAGTTGAAAAGTTCAAGAATTCTGTTTGCAAAGTGTGTGAGAACAAAAGGCCGAAATTTGTTTTGATGAAAGAATTCACATATGTGGAGCTGCATGAAGCAACACATGGTTTTTCGCCGAAGAATTATTTATCGGAAGGTGGATTTGGTTCGGTTTATTGGGGGAAGATGCAAGGACTCAAGATTGCGGTTAAGAAGCATAAGTTTGCAAGTCTTCAAGGGGAGAAGGAATTCAAATCTGAAGTTAATGCACTAAGCAAAGCAATACATGAAAATGTGGTTATGCTGCTAGGATCTTGTTCTGAGGGAAATAACAGATTTCTTGTATATGAATTTGTTTGCAATGGATCACTCGATCAACATTTATCACAACATTCTAGAAAGCCTCTTACTTGGCCGGACAGGATAAAAGTAGCTATCGGAGCCGCAAAAGGCTTATTGTATTTGCATGAGAATAATATAATACATAGAGATGTGAGACCAAGTAACATTCTTGTTACACATGATTATGAAGCAATGCTCGGAGATTTTGGTCTGGCTAGAACCGAACAAATGGACTCCATGTACTCAACCGATGTTGTCGGAACTTTAGGATATATGGCACCGGAATATGCAGAATCTGGTAAAGTATCAACCAAATCAGATGTGTATTCTTTTGGGGTGGTGCTTCTTCAGCTAATAACAGGAATGAGGACCACAGACAAAAAGATTGGACACAAAAGTCTTGTGGGATGGGCTAGGCCATTGCTAAAGGAAAGGAACTATCCGGATCTAATTGATGAAAGGATGATGGATACATATGATTGCCATCAGCTTTTTTGGATGATTCGTTTAGCGGAAAAATGTCTCACCAGGGATCCTCAGAAGCGTTTATCAATGGACACAGTGGTTAGTGCATTAACTCATATAGTAGAGGGTAGCACATGTAGCATGGTACTAAGAGACTGTTCTCCAGCACGGTCTGATTCATCTTATGACATGTCGGAATCTCCTATGTCAGATGTCTCACCAGAATCAGAAGATGAAGAAGAAGATGGAATTGTCTGTGTAGGATGCACCGCAGTCAAGTTACGACCCCCACCATCTCCCCCATTAGGAAGCACTTCATGGAGTAGTACATCAAGCACATGTGTTCACATGGCTGAATGA 1917 0.4027 MMSDESQRIVVIHHASSDLSTKALKWALNGFSLDHGDTLTLVAILPHVNSPTSARFRAIFGTDQNIVEGEVAKKKEKLHNHSSIRKISDQCEEHKIQFLIEVLPGKLPEHAIDAAVRLKATSVILDRDMKKYKKDFMESLSCALLIMKSGNSIKHLREPRKPKISFTGYDNGAPEFSPSLWSMTNAVFRSKSSSNLTKIVCHQLHCQTKQTPEDKDLDMARGYCLLPIPDNQKTSVLEMYPKETAFEHIRNHKTYQIVEKFKNSVCKVCENKRPKFVLMKEFTYVELHEATHGFSPKNYLSEGGFGSVYWGKMQGLKIAVKKHKFASLQGEKEFKSEVNALSKAIHENVVMLLGSCSEGNNRFLVYEFVCNGSLDQHLSQHSRKPLTWPDRIKVAIGAAKGLLYLHENNIIHRDVRPSNILVTHDYEAMLGDFGLARTEQMDSMYSTDVVGTLGYMAPEYAESGKVSTKSDVYSFGVVLLQLITGMRTTDKKIGHKSLVGWARPLLKERNYPDLIDERMMDTYDCHQLFWMIRLAEKCLTRDPQKRLSMDTVVSALTHIVEGSTCSMVLRDCSPARSDSSYDMSESPMSDVSPESEDEEEDGIVCVGCTAVKLRPPPSPPLGSTSWSSTSSTCVHMAE* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4359 638 SUPERFAMILY Protein kinase-like (PK-like) 279 577 IPR011009 -
Psa4g4359 638 Gene3D Phosphorylase Kinase; domain 1 265 368 - -
Psa4g4359 638 MobiDBLite consensus disorder prediction 576 601 - -
Psa4g4359 638 ProSitePatterns Tyrosine protein kinases specific active-site signature. 410 422 IPR008266 GO:0004672|GO:0006468
Psa4g4359 638 Gene3D Transferase(Phosphotransferase) domain 1 369 571 - -
Psa4g4359 638 MobiDBLite consensus disorder prediction 623 638 - -
Psa4g4359 638 PANTHER OS01G0253100 PROTEIN 8 621 IPR045271 GO:0004714|GO:0006468
Psa4g4359 638 ProSiteProfiles Protein kinase domain profile. 294 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4359 638 Gene3D HUPs 1 145 IPR014729 -
Psa4g4359 638 SMART tyrkin_6 294 556 IPR020635 GO:0004713|GO:0006468
Psa4g4359 638 PANTHER TYROSINE KINASE FAMILY PROTEIN 8 621 - -
Psa4g4359 638 Pfam Protein tyrosine and serine/threonine kinase 298 556 IPR001245 GO:0004672|GO:0006468
Psa4g4359 638 MobiDBLite consensus disorder prediction 616 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4359 Psa-Chr4 384589464 384592993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4359 215 570 Trihelix Transcription Factor Family AT5G38560 39.892 6.58e-78 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Psa4g4359 PK_Tyr_Ser-Thr 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4359 - - gmx:100810950 837.795