LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa4g4359	ATGATGTCTGATGAATCACAAAGGATTGTGGTGATCCACCATGCATCTAGTGACTTGAGTACAAAAGCACTTAAATGGGCCCTTAATGGCTTTTCACTTGATCATGGAGACACCCTTACACTTGTTGCAATTCTTCCACATGTAAACAGTCCAACTAGTGCCAGATTTCGTGCAATATTTGGTACTGATCAGAATATTGTTGAGGGAGAGGTTGCTAAGAAGAAAGAAAAACTGCATAATCATTCTTCTATAAGAAAAATTTCTGACCAGTGTGAAGAACACAAGATTCAGTTCTTGATAGAAGTGCTTCCGGGCAAGTTACCGGAGCATGCTATAGACGCTGCCGTCCGTTTGAAAGCGACGTCAGTTATACTTGATAGAGACATGAAGAAATATAAGAAGGATTTCATGGAGAGTCTCTCTTGTGCTTTGCTAATAATGAAAAGTGGTAACTCCATTAAGCACTTGAGAGAGCCAAGGAAACCAAAGATTTCTTTTACTGGTTATGACAACGGAGCTCCGGAATTCTCGCCGAGTTTGTGGAGCATGACAAACGCGGTTTTCCGTTCAAAATCGAGCTCTAATCTAACGAAAATCGTCTGTCATCAGCTTCATTGTCAAACAAAACAAACGCCCGAAGATAAAGATCTCGATATGGCAAGAGGTTATTGCCTATTACCGATTCCAGATAATCAAAAGACTAGTGTTCTTGAAATGTATCCTAAGGAGACAGCATTTGAACATATCAGAAACCATAAAACATATCAAATAGTTGAAAAGTTCAAGAATTCTGTTTGCAAAGTGTGTGAGAACAAAAGGCCGAAATTTGTTTTGATGAAAGAATTCACATATGTGGAGCTGCATGAAGCAACACATGGTTTTTCGCCGAAGAATTATTTATCGGAAGGTGGATTTGGTTCGGTTTATTGGGGGAAGATGCAAGGACTCAAGATTGCGGTTAAGAAGCATAAGTTTGCAAGTCTTCAAGGGGAGAAGGAATTCAAATCTGAAGTTAATGCACTAAGCAAAGCAATACATGAAAATGTGGTTATGCTGCTAGGATCTTGTTCTGAGGGAAATAACAGATTTCTTGTATATGAATTTGTTTGCAATGGATCACTCGATCAACATTTATCACAACATTCTAGAAAGCCTCTTACTTGGCCGGACAGGATAAAAGTAGCTATCGGAGCCGCAAAAGGCTTATTGTATTTGCATGAGAATAATATAATACATAGAGATGTGAGACCAAGTAACATTCTTGTTACACATGATTATGAAGCAATGCTCGGAGATTTTGGTCTGGCTAGAACCGAACAAATGGACTCCATGTACTCAACCGATGTTGTCGGAACTTTAGGATATATGGCACCGGAATATGCAGAATCTGGTAAAGTATCAACCAAATCAGATGTGTATTCTTTTGGGGTGGTGCTTCTTCAGCTAATAACAGGAATGAGGACCACAGACAAAAAGATTGGACACAAAAGTCTTGTGGGATGGGCTAGGCCATTGCTAAAGGAAAGGAACTATCCGGATCTAATTGATGAAAGGATGATGGATACATATGATTGCCATCAGCTTTTTTGGATGATTCGTTTAGCGGAAAAATGTCTCACCAGGGATCCTCAGAAGCGTTTATCAATGGACACAGTGGTTAGTGCATTAACTCATATAGTAGAGGGTAGCACATGTAGCATGGTACTAAGAGACTGTTCTCCAGCACGGTCTGATTCATCTTATGACATGTCGGAATCTCCTATGTCAGATGTCTCACCAGAATCAGAAGATGAAGAAGAAGATGGAATTGTCTGTGTAGGATGCACCGCAGTCAAGTTACGACCCCCACCATCTCCCCCATTAGGAAGCACTTCATGGAGTAGTACATCAAGCACATGTGTTCACATGGCTGAATGA	1917	0.4027	MMSDESQRIVVIHHASSDLSTKALKWALNGFSLDHGDTLTLVAILPHVNSPTSARFRAIFGTDQNIVEGEVAKKKEKLHNHSSIRKISDQCEEHKIQFLIEVLPGKLPEHAIDAAVRLKATSVILDRDMKKYKKDFMESLSCALLIMKSGNSIKHLREPRKPKISFTGYDNGAPEFSPSLWSMTNAVFRSKSSSNLTKIVCHQLHCQTKQTPEDKDLDMARGYCLLPIPDNQKTSVLEMYPKETAFEHIRNHKTYQIVEKFKNSVCKVCENKRPKFVLMKEFTYVELHEATHGFSPKNYLSEGGFGSVYWGKMQGLKIAVKKHKFASLQGEKEFKSEVNALSKAIHENVVMLLGSCSEGNNRFLVYEFVCNGSLDQHLSQHSRKPLTWPDRIKVAIGAAKGLLYLHENNIIHRDVRPSNILVTHDYEAMLGDFGLARTEQMDSMYSTDVVGTLGYMAPEYAESGKVSTKSDVYSFGVVLLQLITGMRTTDKKIGHKSLVGWARPLLKERNYPDLIDERMMDTYDCHQLFWMIRLAEKCLTRDPQKRLSMDTVVSALTHIVEGSTCSMVLRDCSPARSDSSYDMSESPMSDVSPESEDEEEDGIVCVGCTAVKLRPPPSPPLGSTSWSSTSSTCVHMAE*	639

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Psa4g4359	638	SUPERFAMILY	Protein kinase-like (PK-like)	279	577	IPR011009	-
Psa4g4359	638	Gene3D	Phosphorylase Kinase; domain 1	265	368	-	-
Psa4g4359	638	MobiDBLite	consensus disorder prediction	576	601	-	-
Psa4g4359	638	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	410	422	IPR008266	GO:0004672\|GO:0006468
Psa4g4359	638	Gene3D	Transferase(Phosphotransferase) domain 1	369	571	-	-
Psa4g4359	638	MobiDBLite	consensus disorder prediction	623	638	-	-
Psa4g4359	638	PANTHER	OS01G0253100 PROTEIN	8	621	IPR045271	GO:0004714\|GO:0006468
Psa4g4359	638	ProSiteProfiles	Protein kinase domain profile.	294	561	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Psa4g4359	638	Gene3D	HUPs	1	145	IPR014729	-
Psa4g4359	638	SMART	tyrkin_6	294	556	IPR020635	GO:0004713\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa4g4359	Psa-Chr4	384589464	384592993	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa4g4359	215	570	Trihelix Transcription Factor Family	AT5G38560	39.892	6.58e-78	259

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-2	Psa4g4359		PK_Tyr_Ser-Thr	1.5e-48	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa4g4359	-		-	gmx:100810950	837.795

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