Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4358 ATGATGAGACGGATGAAAAAGGAGATTCCGGATGACATGCTCCACGATGATCAGATTGGTTCACAGTTGAACGATGAGGGTAATGGCACAAGTGCCTGTGGAGTTGTTCTCAAGAAAGGGCCATGGACAACTGCTGAGGATGATATATTGGTCAAGTACGTCAAGAAGAATGGAGAGGGGAACTGGAATGCCGTTCAGAAGCAGACAGGCCTGCTGCGTTGTGGAAAAAGTTGTCGATTGCGATGGGCTAATCACCTAAGGCCACATTTAAAGAAAGGGGCATTTACTGAGGAAGAGGAGCGCTTGATTTGTGAGCTGCATGCAAAAATGGGAAACAGATGGGCACGCATGGCAGTGCATTTACCTGGTCGTACCGACAATGAGATAAAAAACTATTGGAACACTCGGATCAAGAGGCGTCACCGAGCTGGCTTGCCACTTTATCCCCCTGGTATATATCAAGCGACTCTTAATAACCAAAGCACTGGTGGAGTTAACGGCCGCAATAAAGTGCATTCTGATTTCTTGCATAAAAAGAGTTTTAATATGCATGATACAATATTTGACTGTCTCAAGGATACCCAGGGAATCTTACCTTATTCGGCTGAGCTTCCTGATATTTCTGATTATGGCAATATGCTAAATGGCTTTGATTCTTCTCAGTACTGTAGTTTTGTGCCATCGACATCATCTAACCCCAAACGTTTTCGAGAGTCACCAATGCCGTTTCTTGATTTCGGTTGTATTGACAGAAACGGTATTTATCCATTTGAACATGTTCAAGATGATGCTTTTGATAAGTTGACACAATCATTTGGGGTGCAATCACCTCTTAATCCTGGTTTTTTCTCAAACAGCTTATCGTGTTACAGCCATTCACTTAAAAATGGCAATTTCTCTACTTCTAAGCCTTTTGAGGCTGTGAAGTCGGAGCTCCCTTCACTCCAATATCCGGAAATTGATTTAGTACACTGGAGTCAGATTGTTCTTACAATTGATGATTTTATCAAGTCTCCTACACCAATTAGTACACTGGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGCAATCTGTACTTCATCAGCGGAAGACTCCGAGCAGTTCCCAAAACCAATATTATGACAGAAGTTCAAATTCATCTACTGCAACTCCCTGTGAAAGAGATGACCTCTCAGCTTGGAGCATGTATGAGCCAGAATGGGAAGACTATGCTGACCCTGTGTCTCCATTTGGCGCATCTTCAATATTGAACGACTGCCCTGCTGTTGGTGCCAACATAAATTCACTGGATGAACAGCCACCTGTTCAGACTGATAATGGCAACATGGTGAAATCAGAGAATATCGACCATGTATGGTCCCCTGACAGTGAGAATTATATCACGTCTCTGTTGAACGATACTCGGCCAGATTTAGTGCTTGATTCAGATTGGTATGAGCCGTGTTCTGGGCATGACAAGAACCAATCCATTGTCACTGATGCTACATCGATGTTTCAGGAAGATCAATTAGCCACCGACTATAAACATATGACTGCTGCTGGAACTTCTAACCCAAGTCAGACTCGCTATTAA 1581 0.432 MMRRMKKEIPDDMLHDDQIGSQLNDEGNGTSACGVVLKKGPWTTAEDDILVKYVKKNGEGNWNAVQKQTGLLRCGKSCRLRWANHLRPHLKKGAFTEEEERLICELHAKMGNRWARMAVHLPGRTDNEIKNYWNTRIKRRHRAGLPLYPPGIYQATLNNQSTGGVNGRNKVHSDFLHKKSFNMHDTIFDCLKDTQGILPYSAELPDISDYGNMLNGFDSSQYCSFVPSTSSNPKRFRESPMPFLDFGCIDRNGIYPFEHVQDDAFDKLTQSFGVQSPLNPGFFSNSLSCYSHSLKNGNFSTSKPFEAVKSELPSLQYPEIDLVHWSQIVLTIDDFIKSPTPISTLESDCSSPQNSGLLQSVLHQRKTPSSSQNQYYDRSSNSSTATPCERDDLSAWSMYEPEWEDYADPVSPFGASSILNDCPAVGANINSLDEQPPVQTDNGNMVKSENIDHVWSPDSENYITSLLNDTRPDLVLDSDWYEPCSGHDKNQSIVTDATSMFQEDQLATDYKHMTAAGTSNPSQTRY* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4358 526 Gene3D - 38 91 - -
Psa4g4358 526 MobiDBLite consensus disorder prediction 363 390 - -
Psa4g4358 526 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Psa4g4358 526 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Psa4g4358 526 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 2 520 - -
Psa4g4358 526 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Psa4g4358 526 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 2 520 - -
Psa4g4358 526 Gene3D - 94 140 - -
Psa4g4358 526 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Psa4g4358 526 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Psa4g4358 526 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Psa4g4358 526 SMART sant 38 88 IPR001005 -
Psa4g4358 526 SMART sant 91 139 IPR001005 -
Psa4g4358 526 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Psa4g4358 526 CDD SANT 41 86 IPR001005 -
Psa4g4358 526 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4358 Psa-Chr4 384570891 384574345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4358 16 521 MYB Transcription Factor Family AT3G11440 39.042 4.63e-102 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa4g4358 Myb_DNA-binding 3.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4358 K09422 - gmx:100810415 702.975