Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4357 ATGAGTTATACAAGTAGAGATGAAGCGTCTGGTTTAACCTCTGCTATGAAAAATAATCTGTGTGCTCAACTTTGGCATGCATGTTCTGGATCTGTATACATCCCCAATGTTGGGGAAAAGGTTTTTTACTTCCCTCAAGGACACTTAGAACAGGTGGCAATATTTCAACATCAACAAGATCATAATATGGAAAATCCTAACTATCATTTGTCCTCTAAAATTTTATGCATAGTTATGGCTATTGAGTTAAAGGCAAAAGTTGATACAGATGAAATTTTTGCTCTTGTTACATTATTCCCATTGCCAGAGCAACAAGAAATTATCTTAGAGGATAATCATGCAATTGAGAGTCCTAGTGAACTGTACTCCTTCAGTCAGATTCTCACTTCATCAGAAATAAGTACACTTGATGGACTTTATATTCCAAAGAAACATGCTGAGAGATGTTTCCCCCCACTGGATATGACCCTTGAACCACCAATGCATGATCTAGTGGCGAAGGACTTGCATGGAAATGAGTGGAATTTTCGACATATTTATTACGGTTATGAGAAAGAACACATGCTTACTAATGGTTGGAGCACATTTGTAAACTCAAAAAATCTTGCTCCTGGAGATTCATGCATTTTTGTTAGTAGTGAGAATGGTGAATTTGGTATTGGGATTCGTCGAGATATGAAACAACATATCAATGTATGCTGCACAACATCGTCTCAACAGTCTAGTCAAAATATGCAACTTCCACCATTGGTTGCTGCTCATCATGCTGTTTGTATTGGAACTTTGTTCCATGTTCAGTACTATCCTTGGATTACTCCTTTTGAATTTATGATTCCTCTGAAAACTTATGTTGAGTCAATTGAAAAAGATTACTCAATTGGAACAAGGGTGCACATGTTGTCTCAAGTTGAAGGATGTGCAAAAAGATATGGTACAATAGTTGGTAATGAAGATACTGATCCCATTAACTGGCCTGCTTCTGATTGGAGATCTCTTAAGGTTCAATGGGATTCTATTCCAAATACTTTTACACATCTGGAAAGGGTTTGTCCTTGGTGGATTGAGCCCTTGAAAAATTCCAAGTTTAAGGGAATCCATGTTCTTCCTTTACCTAAAAAAATAGATGAATATGACTCATTATTGCATGGATTAAGTGGCTTTGGACTCAAGGATACATTTGGAAGTTCATCCAAACCTGAATATCACAAAGTGGACATGGACTTGCAAGGTCAAGATTACAATATCAGAAAGCCTAAAAAATCAAAATTTCTCAATTTTTCTTTCTTTATATTTCTTTGCTTCTCTATATTTGTAATTTGTTTCCTTCGTCTTCTTATGTGA 1341 0.3609 MSYTSRDEASGLTSAMKNNLCAQLWHACSGSVYIPNVGEKVFYFPQGHLEQVAIFQHQQDHNMENPNYHLSSKILCIVMAIELKAKVDTDEIFALVTLFPLPEQQEIILEDNHAIESPSELYSFSQILTSSEISTLDGLYIPKKHAERCFPPLDMTLEPPMHDLVAKDLHGNEWNFRHIYYGYEKEHMLTNGWSTFVNSKNLAPGDSCIFVSSENGEFGIGIRRDMKQHINVCCTTSSQQSSQNMQLPPLVAAHHAVCIGTLFHVQYYPWITPFEFMIPLKTYVESIEKDYSIGTRVHMLSQVEGCAKRYGTIVGNEDTDPINWPASDWRSLKVQWDSIPNTFTHLERVCPWWIEPLKNSKFKGIHVLPLPKKIDEYDSLLHGLSGFGLKDTFGSSSKPEYHKVDMDLQGQDYNIRKPKKSKFLNFSFFIFLCFSIFVICFLRLLM* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4357 446 Gene3D - 290 362 - -
Psa4g4357 446 CDD B3_DNA 123 224 IPR003340 GO:0003677
Psa4g4357 446 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 423 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa4g4357 446 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Psa4g4357 446 PANTHER AUXIN RESPONSE FACTOR 12 423 - -
Psa4g4357 446 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
Psa4g4357 446 SMART B3_2 124 226 IPR003340 GO:0003677
Psa4g4357 446 Gene3D - 121 226 IPR015300 -
Psa4g4357 446 SUPERFAMILY DNA-binding pseudobarrel domain 119 224 IPR015300 -
Psa4g4357 446 Pfam Auxin response factor 253 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4357 Psa-Chr4 383885037 383893536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4357 2 373 B3 DNA Binding Superfamily AT5G62000 43.236 7.67e-101 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa4g4357 B3 2e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4357 - - mtr:MTR_8g446900 520.005