Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4349 ATGAACACCAAACACAACAACACCGCTCAAGCTTGTGCTGCATGCAAATACCAACGTAGAAAATGTGCACCTGATTGCATCTTAGCGCCTTATTTCCCTCATGATCGTCATAGACAATTCATCAATGCTCACAAATTGTTTGGCGTTAGCAACATCAACAAAATCATTAAATATCTTGATCCTCCTCACAAGGATCAAGCCATGCGAACGATTATTTATCAATCTGATATGCGAGCCAATGACCCTGTTGGCGGGTGTTACAGATATATTCAAGATCTTCAAGCTCAGATTGAATATCATACAAATGAACTTGATCTTGTTCATCAACAACTCGCGATTCTTCGAGCTCAACAATCCCAACAACAACAACAACAAGTTAATTATGATGATCAAGTTATTATGAATCAAGATTCTTTGTTAGCATTCTATAATCCATCATCAGGATCTCTTGCGCCGGCTCATTATCATTACAATGTTCAACCACAACAAGATTTTCCAGAAATACAAGACCAATACATTATGATACATGAGAGTAATAGTAGCAGTATTAATAGTACTACTCCTCCTTTGCAACAACATGTTAATAATTGGGGTGCTATGCAAAATTCTATGTCTTTATCATCTTTGTCATTGCATGGACAAAGTAGTAATGCTAGTGATGATTATGATCATAAGCCAATTCTTGATATTCCTTGTGATGAAAGAAGTGAATTAGGGTTTGATTCCATAGAAATACTTCACCATAGTGATGAGGCGGTTTTGTATAATATAGACAATGGAGTAATTAAAGAAGAAGGTGATTACATTCAACAAGTTCAAGTTGAAGGTGAAGGTGAAGCACAAGATCATGATCTGAAAGGTGCTGCAACATTGTTTACTCTGACAAATTGTAATAGTTATGATCAAAGTATTAACTAG 918 0.3584 MNTKHNNTAQACAACKYQRRKCAPDCILAPYFPHDRHRQFINAHKLFGVSNINKIIKYLDPPHKDQAMRTIIYQSDMRANDPVGGCYRYIQDLQAQIEYHTNELDLVHQQLAILRAQQSQQQQQQVNYDDQVIMNQDSLLAFYNPSSGSLAPAHYHYNVQPQQDFPEIQDQYIMIHESNSSSINSTTPPLQQHVNNWGAMQNSMSLSSLSLHGQSSNASDDYDHKPILDIPCDERSELGFDSIEILHHSDEAVLYNIDNGVIKEEGDYIQQVQVEGEGEAQDHDLKGAATLFTLTNCNSYDQSIN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4349 305 Coils Coil 90 110 - -
Psa4g4349 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 7 233 - -
Psa4g4349 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 233 - -
Psa4g4349 305 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Psa4g4349 305 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4349 Psa-Chr4 383151087 383152388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4349 10 125 AS2 family AT3G13850 72.414 3.13e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa4g4349 LOB 2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4349 - - pvu:PHAVU_010G138500g 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4349 4 383151087 383152388 Psa4g4349 4 383151087 383152388 ECH
Psa5g6727 5 559063923 559069252 Psa4g4349 4 383151087 383152388 PCT