Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4341 ATGGTCAAAGGTTTAATGATGTTCCAACAACAACAACAAGTGGTGGAAGAAAACATGTCAAATTTAACTTCTGCATCCGGTGAAGCTAGTGCTTCTTCTGGTAACAGAACTGAATTTGGAACAAGTAGTAGTTACCAACAACAACAACAGCAATACTTGGTTCCTCAAACTCAAACTCAAACTCAAACTCAATCTCAACCAGTGAAAAAAAAGAGAAACCTCCCTGGCAACCCAGACCCTGATGCTGAGGTTATAGCTATGTCACCCAAGAGTCTACTAGCGAAAAACAGATTCATATGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAAAATCTTCAACTTCACAGAAGAGGACACAACTTGCCATGGAAGTTGAAGCAGAGAACAAGCAAAGAAATCAGAAAGAAGGTCTATGTATGTCCAGAAATATCGTGTGTGCATCATGATCCATCAAGGGCTTTGGGAGATTTGACTGGAATCAAGAAGCACTTTTGCAGAAAACACGGCGAGAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACATGTGGAACAAGAGAGTATAGATGTGACTGTGGAACTCTTTTCTCAAGGAGGGACAGTTTCATAACTCATAGAGCATTCTGTGATGCATTAGCAGAAGAAAGTGCAAGAGTTATCACAAATAACACAATTCCGATTATACCCTCATCACAATCACCATCATCTTCTCATCATCATCACATGATAAATCTACAAACTCAATTCAATAATCAAAATCAACATCAACAACAAGAGCTTCATAATAGTTTTCCATTATTGAAAAAAGAACAACAACAACATCAAAGTTTTAATCTTTCTGAAATTCCACCTTGGCTTGGCCCACCAAATGTTGGTGAAATCTCATCATCGATATTCTCTCAAACACAACAACAACAACAACATCAAGAAAACCCTAACCCTAATCATGTTCATGTTCATGGGACCACATTACCTCCTTACCAAACAGTGCCTTCCCCACACATGTCAGCTACTGCATTATTGCAGAAAGCAGCTCAGATGGGTGCAACTATGAATAGAACAGCTTCTGCTTCTTCACCAGCTATGAATGTTAGGTCCCACCAAGTTGATTCTCTCAACAATGTTTCTTCTGGACATTTTGGTTTGAATTTGTTATCATCATCACATGAACATCAACAACAACAACAAAACACAACAGCTACAACAGCAGCAACAACGGCAACAACGACAACGTCGGCTTATCTTAGTAATATTCATGATGTTATGTTTTCTTCTTCATCTCCTTCTGGATTTGAATCAACTCAGTTTGATGAAATGTTTGGTGGCATTATGAATCCAAAGAAAGATCATCATGAGACACACTCTAAAACATCGGGCGATGACGGCGGCGGCGGCGGTGGAAATGAAGGATTGACTAGAGATTTCTTGGGACTAAGGCCACTTTCTCATAGTGATATTCTAAGCATTGCAGAGATTGGAAACTGCATGAATGATGAACAACAAAATCAATCTCAAAAGCCATTATGGCAAGGTTAG 1575 0.3898 MVKGLMMFQQQQQVVEENMSNLTSASGEASASSGNRTEFGTSSSYQQQQQQYLVPQTQTQTQTQSQPVKKKRNLPGNPDPDAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEISCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARVITNNTIPIIPSSQSPSSSHHHHMINLQTQFNNQNQHQQQELHNSFPLLKKEQQQHQSFNLSEIPPWLGPPNVGEISSSIFSQTQQQQQHQENPNPNHVHVHGTTLPPYQTVPSPHMSATALLQKAAQMGATMNRTASASSPAMNVRSHQVDSLNNVSSGHFGLNLLSSSHEHQQQQQNTTATTAATTATTTTSAYLSNIHDVMFSSSSPSGFESTQFDEMFGGIMNPKKDHHETHSKTSGDDGGGGGGNEGLTRDFLGLRPLSHSDILSIAEIGNCMNDEQQNQSQKPLWQG* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4341 524 MobiDBLite consensus disorder prediction 461 480 - -
Psa4g4341 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 120 IPR013087 -
Psa4g4341 524 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Psa4g4341 524 Gene3D Classic Zinc Finger 152 231 - -
Psa4g4341 524 MobiDBLite consensus disorder prediction 20 80 - -
Psa4g4341 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 507 - -
Psa4g4341 524 SUPERFAMILY beta-beta-alpha zinc fingers 97 194 IPR036236 -
Psa4g4341 524 Gene3D Classic Zinc Finger 79 145 - -
Psa4g4341 524 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 21 507 - -
Psa4g4341 524 MobiDBLite consensus disorder prediction 20 71 - -
Psa4g4341 524 Pfam Zinc-finger double-stranded RNA-binding 98 120 IPR022755 -
Psa4g4341 524 SMART c2h2final6 139 169 IPR013087 -
Psa4g4341 524 SMART c2h2final6 174 194 IPR013087 -
Psa4g4341 524 SMART c2h2final6 98 120 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4341 Psa-Chr4 382809324 382812586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4341 19 524 IDZ Gene Family AT3G13810 48.375 1.89e-143 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa4g4341 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4341 K25870 - gmx:100808344 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4341 4 382809324 382812586 Psa5g6758 5 560617355 560620287 ECH
Psa4g4341 4 382809324 382812586 Psa4g4341 4 382809324 382812586 ECH