Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4328 ATGCAACCTATTCTATTCTTAAACATAAGCCAAAGATTCAAGATACAACTTCCTCTGTCATTTATTTCACCATTTTCAAATAACACCAAAACAGTTGATAAAACATTGTTGTCGTCCATATTGGATGTATTTGTCATTTCACACTTATTCATCAAACTAAGGAGAGAAAAACAAAAACAAGACATCATCATGGGACATCACTCTTGCTGCAACAAACAGAAAGTGAAAAGAGGTTTATGGTCTCCTGAAGAAGATGAAAAACTCATCAAATACATCACTACTTATGGACATGGTTGTTGGAGCTCAGTTCCAAAACTTGCTGGTTTGCAAAGATGTGGAAAGAGTTGCAGATTAAGATGGATCAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCATCAAGAAGCTTCACTCATTATAGAACTCCATAGCATTCTAGGAAATAGGTGGGCTCAGATTGCGAAGCATTTACCGGGAAGAACTGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAAATTCTTTCTCATGATATTATTCCATCTTTCACCACAATTTCTGATATTCATACCCCCTACAATATTGGTTTTTTTGAGAGTTTTTTCCCAAACCCTAATTTGATCCAAAACTTCAACCATCATCACCATCAAGATAACCTATACCTTCCAACCTCATCTCAAAATCTACAAGACAATTTCCACCAAATTGACACAAAGGTAGATATCCATAACCATTTGAATGCCAACTTCCTTCACATTCAAAATCCAATGCCACAAATAGTACAACCAATATCTAATCCTTTACCTTGTGAAGATACATGGCCTTTGAATTGTGAAACTCTTCATCTAAATCATAATCTATTACAAAATCAAGTTTCCAAAAGTGATGTCACCCCACTTAACAAGTTAATGCAACAATATGATCACAACTTGGTAGAACTTGAAACCTTTTTTCCTAAACTCAGTGATCATAGTTTTGAGGATTATGTTTGTAGCATCCTAGATTCATCCGATTCCAAGGAACATGAAGCTCCAACAAAATTTCAATGCTACACTCCTAGTATTATTTATCCACAAGATCAAAATGTGGAAGTCATTCATTTGGATAACATTGATGCCCTCATGTCATCATCATTTCCATCCTCAAGCAGCCAAATAGTCACAAACCCTATTATTCCTTTAGGATGGGAGCATGATCATCGTTTTAAATCGCAGTTGCAGTCGTAG 1242 0.3535 MQPILFLNISQRFKIQLPLSFISPFSNNTKTVDKTLLSSILDVFVISHLFIKLRREKQKQDIIMGHHSCCNKQKVKRGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSHQEASLIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKILSHDIIPSFTTISDIHTPYNIGFFESFFPNPNLIQNFNHHHHQDNLYLPTSSQNLQDNFHQIDTKVDIHNHLNANFLHIQNPMPQIVQPISNPLPCEDTWPLNCETLHLNHNLLQNQVSKSDVTPLNKLMQQYDHNLVELETFFPKLSDHSFEDYVCSILDSSDSKEHEAPTKFQCYTPSIIYPQDQNVEVIHLDNIDALMSSSFPSSSSQIVTNPIIPLGWEHDHRFKSQLQS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4328 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 179 IPR017930 -
Psa4g4328 413 PANTHER MYB DOMAIN PROTEIN 55 64 389 - -
Psa4g4328 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 128 IPR017930 -
Psa4g4328 413 ProSiteProfiles Myb-like domain profile. 72 124 IPR001005 -
Psa4g4328 413 SMART sant 129 177 IPR001005 -
Psa4g4328 413 SMART sant 76 126 IPR001005 -
Psa4g4328 413 SUPERFAMILY Homeodomain-like 74 171 IPR009057 -
Psa4g4328 413 PANTHER TRANSCRIPTION FACTOR MYB26 64 389 - -
Psa4g4328 413 Pfam Myb-like DNA-binding domain 130 172 IPR001005 -
Psa4g4328 413 Pfam Myb-like DNA-binding domain 77 124 IPR001005 -
Psa4g4328 413 Gene3D - 132 179 - -
Psa4g4328 413 CDD SANT 80 124 IPR001005 -
Psa4g4328 413 Gene3D - 74 130 - -
Psa4g4328 413 ProSiteProfiles Myb-like domain profile. 125 175 IPR001005 -
Psa4g4328 413 CDD SANT 132 172 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4328 Psa-Chr4 382354183 382356337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4328 64 181 MYB Transcription Factor Family AT3G13890 93.220 1.14e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa4g4328 Myb_DNA-binding 8.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4328 K09422 - gmx:100785147 418.698